Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K02
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 24 3.1
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 3.1
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 23 4.1
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 23 5.4
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 23 7.2
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 23 7.2
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar... 22 9.5
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 22 9.5
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 22 9.5
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 22 9.5
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 22 9.5
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.8 bits (49), Expect = 3.1
Identities = 6/21 (28%), Positives = 17/21 (80%)
Frame = -1
Query: 77 FEAINYVTVRTYVNRHDFSKF 15
F A+N++ ++T ++R+D++ +
Sbjct: 1392 FYALNFLQIKTLLHRYDYADY 1412
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 101 SPLLTNGIPLKSANHFRSLTGTKKQTNVQTRKQ 199
+P+L + L++ NH SL+ TNV T+ +
Sbjct: 345 NPILRSENVLQNDNHHSSLSMDNDPTNVSTKNR 377
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 24 EIMSIDICSYGYVIDGFEVAYVTL*KALYLLME 122
EI++ C G+++DGF V K LL E
Sbjct: 74 EILNNPECKNGFILDGFPRTVVQAEKLTALLDE 106
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 27 IMSIDICSYGYVID 68
I + IC YGYV+D
Sbjct: 506 IKKVAICLYGYVLD 519
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 20 SRNHVY*HMFVRLRN*WLRSS--LCYFIK 100
S HVY H+FVR + W S YFI+
Sbjct: 157 SNVHVYDHLFVRHWDRWNTGSRNTLYFIE 185
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 224 HYHNTYTRFVFLSVHLFVSLFRLSSENDW 138
+Y +Y R ++VH S+ LS+ ++W
Sbjct: 316 NYRQSYLRIDAIAVHKLKSIPLLSTVSNW 344
>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 51 YGYVIDGFEVAYVTL*KALYLLMEFH 128
+G +DG V ++ KAL LL+E++
Sbjct: 371 HGCTLDGVSVVVDSVDKALSLLLEWN 396
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 206 TRFVFLSVHLFVSLFRLSS 150
TRFVFL ++L + F L S
Sbjct: 231 TRFVFLYMYLATAFFLLRS 249
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 122 IPLKSANHFRSLTGTKKQTNVQTRKQI 202
IP+ + HF+S +G K+ VQ + I
Sbjct: 285 IPVHADAHFQSQSGLGKKVIVQHKNDI 311
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 22.2 bits (45), Expect = 9.5
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = +2
Query: 95 IKSPLLTNGIPLKSANH 145
+ P NG+P++ NH
Sbjct: 82 VTGPYKVNGVPIRRVNH 98
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 209 YTRFVFLSVHLFVSLFRLSSENDWPILM 126
+ RF F+ H SLF L W +++
Sbjct: 147 FKRFRFMMTHAQASLFNLYEGRWWTLVV 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,327
Number of Sequences: 5004
Number of extensions: 15881
Number of successful extensions: 33
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -