Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K02
         (227 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187...    29   0.70 
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437...    26   4.9  
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611...    25   6.5  

>01_06_0006 -
           25517892-25517935,25518156-25518276,25518598-25518733,
           25519189-25519280,25519358-25519426,25519710-25519821,
           25519897-25520015,25520302-25520355,25520811-25520891,
           25520968-25521051,25521124-25521315,25521633-25521746,
           25521832-25521978,25522066-25522302,25522762-25522810,
           25522894-25523027,25523124-25523324,25523532-25523701,
           25523773-25523875,25524198-25524361,25525015-25525055,
           25525144-25525187
          Length = 835

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 89  YFIKSPLLTNGIPLKSANHFRS--LTGTKKQTNVQTRKQISCMCCDNV 226
           + +K+P   N   LKS +  ++  LTGT  Q N+     +  +CC  V
Sbjct: 347 HVLKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTV 394


>01_06_0705 +
           31342236-31342415,31343086-31343391,31343555-31343796,
           31343927-31344122,31344419-31344602,31344984-31345147,
           31345454-31345981,31346530-31346630,31347619-31347634,
           31347834-31347941,31348028-31348078,31349059-31349100,
           31349442-31349541,31350039-31350256,31350367-31350807,
           31350916-31351043,31351131-31351992
          Length = 1288

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 86  CYFIKSPLLTNGIPLKSANHFRSLTGTKKQTNVQTR 193
           C+  K+ LL   +PL S N   S TG+ K     T+
Sbjct: 166 CFNRKAGLLETTVPLGSFNSLFSFTGSWKNDEAATK 201


>01_06_0210 -
           27559090-27559239,27560445-27560567,27561069-27561128,
           27562045-27562068,27562313-27562653,27562684-27563731
          Length = 581

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 18  FREIMSIDICSYGYVIDG 71
           FR I   D CSY  VIDG
Sbjct: 198 FRNIPKPDACSYNTVIDG 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,234,993
Number of Sequences: 37544
Number of extensions: 80568
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)