Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K02
         (227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical pr...    26   4.1  
X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.        26   4.1  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    26   4.1  
U28944-17|ABB88239.1|  222|Caenorhabditis elegans Hypothetical p...    25   9.6  
AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 107 LLTNGIPLKSANHFRSLTGTKKQTNVQTR 193
           L  NGI +  A H+R L G  +++ V  R
Sbjct: 398 LTANGINMSKAQHYRMLQGLLQKSGVHIR 426


>Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical
           protein W09C2.1b protein.
          Length = 416

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 119 GIPLKSANHFRSLTGTKK-QTNVQTRKQISCMCC 217
           G+  K  +H R L   KK Q N Q R  I C+ C
Sbjct: 242 GLYFKMNHHARPLVKPKKRQQNAQKRTGIECVNC 275


>Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical
           protein W09C2.1a protein.
          Length = 488

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 119 GIPLKSANHFRSLTGTKK-QTNVQTRKQISCMCC 217
           G+  K  +H R L   KK Q N Q R  I C+ C
Sbjct: 314 GLYFKMNHHARPLVKPKKRQQNAQKRTGIECVNC 347


>X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.
          Length = 416

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 119 GIPLKSANHFRSLTGTKK-QTNVQTRKQISCMCC 217
           G+  K  +H R L   KK Q N Q R  I C+ C
Sbjct: 242 GLYFKMNHHARPLVKPKKRQQNAQKRTGIECVNC 275


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 121 NSIKIGQSFSELNRNKETNKCTDKKTNLVYV 213
           NS+ +G    +   N + N CT K T   YV
Sbjct: 774 NSVAVGSHRHQTAENMDLNFCTYKSTGRAYV 804


>U28944-17|ABB88239.1|  222|Caenorhabditis elegans Hypothetical
           protein C18A3.11 protein.
          Length = 222

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 68  WLRSSLCYFIK 100
           WLRS +CYF K
Sbjct: 203 WLRSEICYFSK 213


>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 203 RFVFLSVHLFVSLFRLSSENDWPILMEFH 117
           R V  SV  F+   +L S ND+P L+EFH
Sbjct: 437 RKVIPSVLKFIE--KLGSMNDFPELVEFH 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,047,712
Number of Sequences: 27780
Number of extensions: 83931
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)