Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K01
(218 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 28 0.15
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 28 0.19
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 0.44
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 1.8
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 24 2.4
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 23 4.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 23 4.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 23 4.1
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 23 4.1
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 23 5.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 23 7.2
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 23 7.2
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 23 7.2
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 22 9.6
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 22 9.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 22 9.6
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 22 9.6
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 0.15
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 13 SQLLRNVFDNVQTRQLHELKNKERAGVAKLREVLEDRLQE 132
SQLL++ +N TR LK+K++ V+ + +V +D+L +
Sbjct: 103 SQLLQDDVENAFTRYAASLKDKKKMIVSGIEKVHKDKLSK 142
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 27.9 bits (59), Expect = 0.19
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 103 REVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQGSDG 216
REV+ED ++++ W E L + D +K +G G
Sbjct: 61 REVVEDVFAKVEQEHPWVKETKLVAKPDQLIKRRGKSG 98
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 0.44
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 91 VAKLREVLEDRLQEIKR-AKTWKHERVLTSPQDTKVKVQGSD 213
+ K E+L+ + ++R K W H RVLT D + +V+ ++
Sbjct: 545 IEKAAELLDQPKEIVERHLKFWLHHRVLTDIGDDRYRVRETE 586
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 13 SQLLRNVFDNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHE 162
S + N ++ T +E+ N GV RE+++ + E WK E
Sbjct: 486 SYFVTNKNGDLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDE 535
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 42 CSNTSATRVEKQGTCRSCKASGSFR 116
C T T + CRSC SG+ R
Sbjct: 283 CGGTGTT-IPPNSACRSCMGSGTVR 306
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 217 LHRNLVPSPSYPEVKLTHVHVSTF*LFLSPEGDLLKLPEALQLL 86
+HR SP+ E K H V T L+P L ++ E+L L
Sbjct: 130 VHRASSTSPAIIEGKFAHAVVPTAEQPLAPMDTLKEITESLHTL 173
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 61 VADVFEHCRIHCAVAVSA 8
+++VF+HCRI VSA
Sbjct: 1513 LSEVFDHCRIVSLYTVSA 1530
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 76 KERAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKV 201
KE+ V R++LE RLQ + + K + E + S D K K+
Sbjct: 177 KEKTKVQGQRDLLEQRLQGLMK-KLTEVESLTVSLNDEKNKL 217
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 82 RAGVAKLREVLEDRLQE 132
RAGV K ++++ +RLQE
Sbjct: 1258 RAGVVKAKDLIFERLQE 1274
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 46 QTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQD 186
QTR+L E K++ + + LE+ L +KR + + QD
Sbjct: 130 QTRKLSERTEKQQDELDIALDDLEETLNTLKRTSENRDREIARISQD 176
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 160 HVSTF*LFLSPEGDLLKLPEALQLLHVPCFSTRVADV 50
H+S+F ++L P+ LL LQL+ F V V
Sbjct: 406 HLSSFQIYLKPKDYLLDPKPLLQLICASFFGFPVGFV 442
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 37 DNVQTRQLHELKNKERAGVAKLREVLEDRLQ 129
D ++ E KE + KLRE+ + RLQ
Sbjct: 196 DQELRNKIEERNKKELETIEKLRELAKARLQ 226
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 136 KRAKTWKHERVLTSPQDTKV 195
K K WK V T+P++T V
Sbjct: 20 KSKKDWKDASVETTPRETSV 39
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +1
Query: 13 SQLLRNVFDNVQTRQLHELKNKERAGVAKLREVLED 120
S RN+ V+ R+LH K + + +++L++
Sbjct: 137 SAAARNLVKKVEKRELHSRPPKRKLDDVESKQILKE 172
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 55 QLHELKNKERAGVAKLREVLED 120
+LH+L+NKE V+ ++L +
Sbjct: 125 RLHQLRNKELISVSAASKILSN 146
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 55 QLHELKNKERAGVAKLREVLEDRL 126
+LHEL N+ GVA + + D +
Sbjct: 1395 ELHELVNQFLTGVASINHPIADHV 1418
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/39 (17%), Positives = 22/39 (56%)
Frame = +1
Query: 97 KLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQGSD 213
++ +LE++ + + + W+ ++L + DT++ S+
Sbjct: 558 QIANLLENKEKSRELLEAWQEWKILNAKDDTRIGTTNSN 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,900
Number of Sequences: 5004
Number of extensions: 13739
Number of successful extensions: 34
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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