Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K01
(218 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0884 - 8675591-8675645,8675718-8675761,8675909-8676028,867... 31 0.17
11_06_0350 + 22573760-22575262 27 2.1
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 27 2.1
05_06_0164 + 26085766-26085799,26086908-26087030,26087406-260875... 27 2.1
05_03_0509 + 14858250-14858545,14859139-14859243,14859345-14859912 27 2.1
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 27 2.1
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 26 3.6
01_06_1616 + 38670457-38670885,38670989-38671365,38672593-386726... 26 3.6
09_02_0181 - 5425833-5426527,5426667-5429397 26 4.7
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 26 4.7
01_01_0635 - 4795434-4795461,4795897-4797365 26 4.7
02_04_0557 + 23865202-23865437,23865469-23865997 25 6.3
01_05_0290 - 20487105-20487113,20487171-20487213,20488336-204884... 25 6.3
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 25 8.3
>08_01_0884 -
8675591-8675645,8675718-8675761,8675909-8676028,
8676148-8676225,8676401-8676511,8676765-8676842,
8676934-8676999,8677098-8677175,8677256-8677318,
8677452-8677541,8677616-8677712,8679078-8679175,
8679600-8679729,8679867-8680042
Length = 427
Score = 30.7 bits (66), Expect = 0.17
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 10 RSQLLRNVFDN--VQTRQLHELKNKERAGVAKLREVLEDRLQEIKR 141
R + + V N V+T+Q+HE+K KE+ + KL+E L L E K+
Sbjct: 186 RDEFQKMVIGNQQVRTQQIHEMKKKEKEYI-KLQEKLNQVLMEKKK 230
>11_06_0350 + 22573760-22575262
Length = 500
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 82 VPCFSTRVADVFEHCRIH-CAVAVSAL 5
VPC TRV FE+CR ++AVS L
Sbjct: 393 VPCEVTRVTLTFEYCRREKTSIAVSVL 419
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 82 RAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQ 204
R +RE +E+ + ++ A+ W+ ERV D K ++
Sbjct: 248 RRECVSMREEMEEERRMLQMAEVWREERVQMKLSDAKAVLE 288
>05_06_0164 +
26085766-26085799,26086908-26087030,26087406-26087525,
26087632-26087696
Length = 113
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 88 GVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVK 198
G A +++ +++K+ K WKH + +T Q +K++
Sbjct: 2 GCAGSTPKVDENSKKLKKPKPWKHTQAITPTQLSKMR 38
>05_03_0509 + 14858250-14858545,14859139-14859243,14859345-14859912
Length = 322
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +3
Query: 3 TRALTATAQCIRQCSNTSATRVEKQGTCRSCKASGSFRRSPSGDKKS 143
+RA+ A + + + V+ + TC ++G R++P+ D+K+
Sbjct: 48 SRAMRALDKAAVSAAGGEGSEVQSEVTCGGGASAGGKRKAPAADRKA 94
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 97 KLREVLEDRLQEIKRAKTWKHERVLTSPQDTKV 195
KLRE +++ + ++ A+ W+ ERV D K+
Sbjct: 354 KLREEVDEERKMLQMAEVWREERVQMKLVDAKL 386
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 22 LRNVFDNVQTRQLHELKNKERAGVAKLREVLEDRLQEIKRA 144
+RN+ D V+ E KN++RA + + V E L E+K A
Sbjct: 257 VRNILDAVKEELNRERKNRQRAEIMNSKLVSE--LSELKSA 295
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 97 KLREVLEDRLQEIKRAKTWKHERVLTSPQDTKV 195
K+R+ +E+ + ++ A+ W+ ERV D K+
Sbjct: 340 KMRDEVEEEKKMLQMAEVWREERVQMKLVDAKL 372
>01_06_1616 +
38670457-38670885,38670989-38671365,38672593-38672640,
38673200-38673242,38673673-38673786,38674049-38674348
Length = 436
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 91 LLHVPCFSTRVADVFEHCRIHCAVAVSA 8
L+ +PCF+ +A C +H +VAV A
Sbjct: 312 LVCLPCFAHDMAHACRECMMHISVAVLA 339
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 29 MYSTMFKHVSYTS*KTRNVQELQSFGK 109
+Y+ +FKH Y TRNV+ L+ K
Sbjct: 16 IYNAIFKHALYPFKVTRNVENLEKATK 42
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 4 RGRSQLLRNVFDNVQTRQLHELKNKERAGVAK 99
RGR+++ +DN++ LH N++R+ AK
Sbjct: 1213 RGRTKMKHYDWDNLRKEVLHNHGNRQRSDKAK 1244
>01_01_0635 - 4795434-4795461,4795897-4797365
Length = 498
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 6 RALTATAQCIRQCSNTSATRVEKQGTCRSCKAS 104
R ++ CI CSN S + V + RSC++S
Sbjct: 203 RIMSREGTCILSCSNNSPSFVVAELERRSCQSS 235
>02_04_0557 + 23865202-23865437,23865469-23865997
Length = 254
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 124 GDLLKLPEALQLLHVPCFSTRVADVFEHCRIHCAVAVSALV 2
G+ + A L + C TR +HCR C V V+ V
Sbjct: 63 GEQRRRSVAAWLSVISCIRTRARGGDDHCRRRCRVLVATAV 103
>01_05_0290 -
20487105-20487113,20487171-20487213,20488336-20488412,
20489096-20489163,20489266-20489456,20490687-20490798,
20490892-20490943,20491984-20492076,20493065-20493211,
20493381-20493410,20493764-20493862,20495188-20495322,
20495420-20495498,20495989-20496064,20496345-20496423,
20496513-20496547,20497185-20497259,20497405-20497804
Length = 599
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/58 (20%), Positives = 24/58 (41%)
Frame = +1
Query: 43 VQTRQLHELKNKERAGVAKLREVLEDRLQEIKRAKTWKHERVLTSPQDTKVKVQGSDG 216
+ R LH + + E+L++ + E+ T+ T+P+D + DG
Sbjct: 141 INPRFLHSNATSHKWAFGAIAELLDNAIDEVNTGATFVRVNEFTNPRDGSSSLLIQDG 198
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 43 VQTRQLHELKNKERAGVAKLREVLEDRLQE 132
V+ RQL + NKE L EVLE+ ++E
Sbjct: 279 VEYRQLEFIPNKEEEPPQPLPEVLEEPVKE 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.129 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,667,898
Number of Sequences: 37544
Number of extensions: 92726
Number of successful extensions: 237
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -