Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K01
         (218 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   0.43 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   3.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   3.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   4.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   6.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 0.43
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 139 FLSPEGDLLKLPEALQLLHVPCFSTRVADV 50
           +LS E D+L++P +    + PC +   +D+
Sbjct: 210 YLSVEWDILEVPASRNEEYYPCCTEPYSDI 239


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 133 SPEGDLLKLPEALQLLHVPCFSTRVADVF 47
           S E D+L +P      + PC      D+F
Sbjct: 198 SVEWDILGVPAERHKKYYPCCDEPYPDIF 226


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 88   GVAKLREVLEDRLQEIKRAKTWKHERV 168
            G+A  R     RL EIKR    ++ +V
Sbjct: 976  GIAPFRGFWHHRLAEIKRRPDLEYGKV 1002


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 4.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 34  FDNVQTRQLHELKNK 78
           FDN  T Q+  LKN+
Sbjct: 310 FDNFVTVQIQPLKNE 324


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 168 HTFMFPRFSSFY 133
           H F++P  SS Y
Sbjct: 370 HLFLYPEVSSTY 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.129    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,992
Number of Sequences: 438
Number of extensions: 881
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)