Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J24
(296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 25 2.4
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 4.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 24 4.2
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 24 4.2
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 24 4.2
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 23 7.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 7.3
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 23 9.6
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 38 SFVVRQIIQSSSYLIK*QYPPS 103
++ VRQ++QS+SYL+ + P+
Sbjct: 64 TYAVRQVVQSNSYLLFDELSPT 85
>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 4.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 82 KMTVSTIALSQTGPTSERQLALLDYNRDWYVVTIKENK 195
+M + S+T PT ++ L+ D +DW V+T NK
Sbjct: 211 EMNTKPLKTSKTTPT-KKMLSTTD-TKDWLVITPVPNK 246
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 24.2 bits (50), Expect = 4.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 128 VKDSSLYLITIEIGTSL--LLRRINHSSSNWDR 220
VK+ +YLI + + T +L ++SNWD+
Sbjct: 771 VKEQDIYLILVTLSTHKNGVLAMWKFATSNWDK 803
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 24.2 bits (50), Expect = 4.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = +1
Query: 205 VKLGSQVLSIAWSLETELLV---GLRANSVVAW 294
+ GSQV ++ WS +T + G N V W
Sbjct: 457 IDTGSQVCNLLWSKQTNEFISTHGFMENEVALW 489
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 24.2 bits (50), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 13 VPNSARGLIVRSST-DNTVVKLSHKMTVSTIALS 111
+P+S++ + SST DN +V S TVS+ +S
Sbjct: 107 IPSSSQTISASSSTTDNVIVSSSISSTVSSTPVS 140
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 63 CIICRTTNDQTSCRIRHEASC 1
C C TT + ++ + HEA+C
Sbjct: 177 CSKCNTTFNHSTALMMHEATC 197
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 23.4 bits (48), Expect = 7.3
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 16 PNSARGLIVRSST---DNTVVKLSHKMTVSTIALSQTGPTSERQL 141
P +V SST +TVV S +T ST+ S T TS L
Sbjct: 1654 PPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTAL 1698
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 481 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 510
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 889 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 918
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 1045 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 1074
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 1825 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 1854
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 2017 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 2046
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 2281 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 2310
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 2593 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 2622
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 2689 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 2718
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 2917 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 2946
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 3013 TSSTVVNTSTPITSSTVVNSSTPITSSTAL 3042
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQTGPTSERQL 141
T +TVV S +T ST+ S T TS L
Sbjct: 3277 TSSTVVNTSTPITSSTVVNSSTPITSSTTL 3306
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = -3
Query: 225 NLRSQFDELWFILLNSNDVPISIVIK*SELSFTRRSCLT 109
NL+S D+ + + ++S PI +++ +SF +T
Sbjct: 73 NLKSSEDQAYALCIDSFSNPIGLLMAQGNISFAHAFMMT 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,685
Number of Sequences: 5004
Number of extensions: 20473
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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