Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J24
         (296 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0919 - 32721734-32722954,32723424-32723729,32724415-32724492     27   2.0  
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510...    26   4.6  
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579...    26   6.0  
10_08_0457 + 18076911-18077272,18077356-18077475,18077554-180777...    26   6.0  
05_07_0108 + 27735783-27736205                                         26   6.0  
11_05_0006 + 18316064-18316258,18316458-18316507,18317826-183178...    25   8.0  
04_03_0038 + 10023515-10023590,10023900-10023994                       25   8.0  

>02_05_0919 - 32721734-32722954,32723424-32723729,32724415-32724492
          Length = 534

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +2

Query: 98  PSL*VKQDLRVKDSSLYLITIEIGTSLLLR 187
           P L V+  LR+ DSS  L+  E GTS LLR
Sbjct: 246 PRLLVRTGLRMLDSSSLLLPDEGGTSSLLR 275


>07_03_1757 +
           29250163-29250349,29250612-29250813,29250898-29251008,
           29251112-29251160,29251247-29251353,29251439-29251942,
           29252486-29252614,29252865-29253161,29253274-29253720,
           29253828-29253893,29254109-29254169,29254314-29254463,
           29254555-29254689,29254791-29254818,29255430-29255479
          Length = 840

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 246 QAPSNAQNLRSQFDELWFILLNSNDVPI 163
           ++P+    +RS F  LWF +L    +PI
Sbjct: 662 RSPNKFARIRSNFPLLWFAILADPTIPI 689


>11_03_0162 -
           10956997-10957323,10957390-10957568,10957823-10957922,
           10959333-10959397,10959480-10959572,10961062-10961607,
           10961627-10961678,10961753-10961884,10963049-10963210,
           10963532-10963582
          Length = 568

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 284 TEFARKPTRSSVSKLQAMLKTCDPNLTNYGLFSLIVTTYQ 165
           T+F R P  S V+ + A +   DPN TN  L  L++  +Q
Sbjct: 404 TDFDRFPINSHVALIIAFVINNDPNKTN--LSRLLIVMWQ 441


>10_08_0457 +
           18076911-18077272,18077356-18077475,18077554-18077782,
           18077993-18078652,18079224-18079425,18079521-18079611,
           18079780-18079837
          Length = 573

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 37  IVRSSTDNTVVK--LSHKMTVSTIALSQTGPTSERQLALLDYNRDW 168
           I RS+ ++ + K  L H +  + + + +TG   E+   L D + DW
Sbjct: 496 ISRSTKNSLITKQELFHNILANNLEIEETGEIEEQLHILEDLSPDW 541


>05_07_0108 + 27735783-27736205
          Length = 140

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 16  PNSARGLIVRSSTDNTVVKLSHKMTVSTIALSQTGPTSERQLALLDYNRD 165
           PN A G  V    D+T        TV+ +A S T    E  +A++D   D
Sbjct: 17  PNDAGGACVDGGKDDTGAAQLLPATVARMADSMTTAADEASMAVVDGGLD 66


>11_05_0006 +
           18316064-18316258,18316458-18316507,18317826-18317886,
           18317972-18318007,18318852-18318902,18321271-18321375,
           18321508-18321600,18321698-18321841
          Length = 244

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 158 IEIGTSLLLRRINHSSSNWD 217
           + +G  LLLRR+  S++ WD
Sbjct: 33  VVVGGVLLLRRLRRSTTRWD 52


>04_03_0038 + 10023515-10023590,10023900-10023994
          Length = 56

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 277 SLANLQGVRFPSSKQCSKLAIPI*RTMVY 191
           S   + G +  + +QC+K A PI R++VY
Sbjct: 20  SAFKVHGNKKTTKEQCTKTATPIPRSLVY 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,499,380
Number of Sequences: 37544
Number of extensions: 121049
Number of successful extensions: 282
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)