Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J24
         (296 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113669-1|AAI13670.1|  777|Homo sapiens intraflagellar transpor...    56   2e-08
BC101494-1|AAI01495.1|  777|Homo sapiens intraflagellar transpor...    56   2e-08
BC042027-1|AAH42027.1|  536|Homo sapiens IFT80 protein protein.        56   2e-08
AB037795-1|BAA92612.1|  764|Homo sapiens KIAA1374 protein protein.     56   2e-08
BC005070-1|AAH05070.1|   41|Homo sapiens MGC13005 protein protein.     27   8.2  

>BC113669-1|AAI13670.1|  777|Homo sapiens intraflagellar transport
           80 homolog (Chlamydomonas) protein.
          Length = 777

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +1

Query: 73  LSHKMTVSTIALSQTGPTSERQLALLDYNRDWYVVTIKE--NKP*FVKLGSQVLSIAWSL 246
           LSHK  +  IAL Q G T++R++A +D NRD  + ++K    +   +KLG+ V ++AW+ 
Sbjct: 457 LSHKNEILEIALDQKGLTNDRKIAFIDKNRDLCITSVKRFGKEEQIIKLGTMVHTLAWND 516

Query: 247 ETELLVGLRANSVVAW 294
              +L GL+    + W
Sbjct: 517 TCNILCGLQDTRFIVW 532


>BC101494-1|AAI01495.1|  777|Homo sapiens intraflagellar transport
           80 homolog (Chlamydomonas) protein.
          Length = 777

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +1

Query: 73  LSHKMTVSTIALSQTGPTSERQLALLDYNRDWYVVTIKE--NKP*FVKLGSQVLSIAWSL 246
           LSHK  +  IAL Q G T++R++A +D NRD  + ++K    +   +KLG+ V ++AW+ 
Sbjct: 457 LSHKNEILEIALDQKGLTNDRKIAFIDKNRDLCITSVKRFGKEEQIIKLGTMVHTLAWND 516

Query: 247 ETELLVGLRANSVVAW 294
              +L GL+    + W
Sbjct: 517 TCNILCGLQDTRFIVW 532


>BC042027-1|AAH42027.1|  536|Homo sapiens IFT80 protein protein.
          Length = 536

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +1

Query: 73  LSHKMTVSTIALSQTGPTSERQLALLDYNRDWYVVTIKE--NKP*FVKLGSQVLSIAWSL 246
           LSHK  +  IAL Q G T++R++A +D NRD  + ++K    +   +KLG+ V ++AW+ 
Sbjct: 216 LSHKNEILEIALDQKGLTNDRKIAFIDKNRDLCITSVKRFGKEEQIIKLGTMVHTLAWND 275

Query: 247 ETELLVGLRANSVVAW 294
              +L GL+    + W
Sbjct: 276 TCNILCGLQDTRFIVW 291


>AB037795-1|BAA92612.1|  764|Homo sapiens KIAA1374 protein protein.
          Length = 764

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +1

Query: 73  LSHKMTVSTIALSQTGPTSERQLALLDYNRDWYVVTIKE--NKP*FVKLGSQVLSIAWSL 246
           LSHK  +  IAL Q G T++R++A +D NRD  + ++K    +   +KLG+ V ++AW+ 
Sbjct: 444 LSHKNEILEIALDQKGLTNDRKIAFIDKNRDLCITSVKRFGKEEQIIKLGTMVHTLAWND 503

Query: 247 ETELLVGLRANSVVAW 294
              +L GL+    + W
Sbjct: 504 TCNILCGLQDTRFIVW 519


>BC005070-1|AAH05070.1|   41|Homo sapiens MGC13005 protein protein.
          Length = 41

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 295 TKPPLNSLANLQGVRFPSSKQCSK 224
           T  PLN L+ LQ + +P++  C+K
Sbjct: 16  TSLPLNHLSKLQDIFYPNTSNCAK 39


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,383,469
Number of Sequences: 237096
Number of extensions: 702116
Number of successful extensions: 1310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 76,859,062
effective HSP length: 75
effective length of database: 59,076,862
effective search space used: 1358767826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)