Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J24
(296 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein... 34 0.021
AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal chem... 34 0.021
Z81500-8|CAM84816.1| 284|Caenorhabditis elegans Hypothetical pr... 31 0.15
Z81510-5|CAB04165.1| 188|Caenorhabditis elegans Hypothetical pr... 28 1.4
Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical pr... 28 1.4
AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ... 28 1.4
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z93378-7|CAB07587.1| 605|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z93375-5|CAB07566.1| 605|Caenorhabditis elegans Hypothetical pr... 25 7.4
AF003132-3|AAB54135.1| 419|Caenorhabditis elegans Hypothetical ... 25 7.4
>AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein
protein.
Length = 760
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 73 LSHKMTVSTIALSQTGPTSERQLALLDYNRDWYVVTIKE--NKP*FVKLGSQVLSIAWSL 246
L H+ + + ++Q GP ++R +A D ++ +K VK+GS V + ++
Sbjct: 455 LKHEHDIVELTVNQCGPLNDRNVAFRDQIGAVHIAMVKTFGVSQRMVKIGSLVEQLVFND 514
Query: 247 ETELLVGLRANSVVAW 294
T +L G+ + W
Sbjct: 515 VTNMLCGISEGKIAVW 530
>AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal
chemotaxis protein 2 protein.
Length = 760
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 73 LSHKMTVSTIALSQTGPTSERQLALLDYNRDWYVVTIKE--NKP*FVKLGSQVLSIAWSL 246
L H+ + + ++Q GP ++R +A D ++ +K VK+GS V + ++
Sbjct: 455 LKHEHDIVELTVNQCGPLNDRNVAFRDQIGAVHIAMVKTFGVSQRMVKIGSLVEQLVFND 514
Query: 247 ETELLVGLRANSVVAW 294
T +L G+ + W
Sbjct: 515 VTNMLCGISEGKIAVW 530
>Z81500-8|CAM84816.1| 284|Caenorhabditis elegans Hypothetical
protein F11D11.14 protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 34 LIVRSSTDNTVVKLSHKMTVSTIALSQTGPTSERQLALLDYNRDWYVVTIKENKP*FVKL 213
L++RS D +VKL K+ S I+ + T+E + YN + +V I +
Sbjct: 11 LVIRSFCDMKMVKLYGKVNESAISSTLNVETAEECITRCYYNSNCILVRIFQTSCEVFNF 70
Query: 214 GSQVLSIAWSLETE 255
++S+A S T+
Sbjct: 71 QKAIISVAMSNNTD 84
>Z81510-5|CAB04165.1| 188|Caenorhabditis elegans Hypothetical
protein F21D9.8 protein.
Length = 188
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -3
Query: 69 DDCIICRTTNDQTSCRIRHEASC 1
D C +C ++ C+ HEA C
Sbjct: 146 DTCSVCANNTNRVGCKYHHEALC 168
>Z81078-4|CAJ15165.1| 392|Caenorhabditis elegans Hypothetical
protein F36H2.5 protein.
Length = 392
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 167 GTSLLLR-RINHSSSNWDRKF*ALLGAWKPNSL*VCER 277
GT + LR N++++N D G W P SL +C+R
Sbjct: 39 GTIVTLRCDTNYAATNGDTSAICTNGVWSPKSLAMCQR 76
>AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ion
channel protein 5 protein.
Length = 340
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Frame = +1
Query: 52 TDNTVVKLSHKMTVSTIALSQT------GPTSERQLALLDYNRDWYVVTI 183
T NT + LS T TI SQ P L DYNR+W +++
Sbjct: 56 TPNTFLLLSMDQTQETILFSQEFLLKWYDPILHWNRTLFDYNREWIKISV 105
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 205 VKLGSQVLSIAWSLETELLV---GLRANSVVAW 294
V GSQV ++AWS + LV G N V+ W
Sbjct: 605 VDTGSQVCNVAWSKHSSELVSTHGYSFNHVIIW 637
>Z93378-7|CAB07587.1| 605|Caenorhabditis elegans Hypothetical
protein C38C6.6 protein.
Length = 605
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 31 GLIVRSSTDNTVVKLSHKMTVSTIALSQTGPTS 129
G +V NTVV + + T ++ QTGP S
Sbjct: 247 GKVVADKNGNTVVYNDKDVPIGTGSVKQTGPKS 279
>Z93375-5|CAB07566.1| 605|Caenorhabditis elegans Hypothetical
protein C38C6.6 protein.
Length = 605
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 31 GLIVRSSTDNTVVKLSHKMTVSTIALSQTGPTS 129
G +V NTVV + + T ++ QTGP S
Sbjct: 247 GKVVADKNGNTVVYNDKDVPIGTGSVKQTGPKS 279
>AF003132-3|AAB54135.1| 419|Caenorhabditis elegans Hypothetical
protein F37E3.3 protein.
Length = 419
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 10 LVPNSARGLIVRSSTDNTVVKLSHKMTVSTIALSQ 114
LV N A GL+ +DNTV + + +A ++
Sbjct: 294 LVFNGASGLLYEGKSDNTVTMVDYDSNAPEVAFTR 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,448,909
Number of Sequences: 27780
Number of extensions: 110569
Number of successful extensions: 244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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