Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J24
         (296 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 224 TCDPNLTNYGLF 189
           +CDPNL  YG++
Sbjct: 581 SCDPNLAVYGVW 592


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 84  NDSIHHRSESNRTY 125
           ND  HH S+SN  +
Sbjct: 447 NDQAHHSSKSNNRH 460


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 72   LDDCIICRTTNDQ 34
            L DC +C + ND+
Sbjct: 1065 LYDCYVCYSPNDE 1077


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,560
Number of Sequences: 438
Number of extensions: 1220
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)