Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J23
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...   104   1e-23
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...   104   1e-23
Z83316-7|CAB05890.1|  134|Caenorhabditis elegans Hypothetical pr...    27   1.4  
U43282-2|AAY86313.1|   73|Caenorhabditis elegans Hypothetical pr...    27   2.4  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical pr...    25   7.3  
M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase I...    25   7.3  
AF036694-7|AAB88345.2|  116|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z96048-2|CAB09420.1|  155|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    25   9.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score =  104 bits (249), Expect = 1e-23
 Identities = 44/70 (62%), Positives = 54/70 (77%)
 Frame = +1

Query: 13  AQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 192
           AQGRRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ +KRCKHFELGG 
Sbjct: 36  AQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQ 95

Query: 193 EKRKGQMIQF 222
           +K +GQ+IQF
Sbjct: 96  KKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score =  104 bits (249), Expect = 1e-23
 Identities = 44/70 (62%), Positives = 54/70 (77%)
 Frame = +1

Query: 13  AQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 192
           AQGRRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ +KRCKHFELGG 
Sbjct: 36  AQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQ 95

Query: 193 EKRKGQMIQF 222
           +K +GQ+IQF
Sbjct: 96  KKSRGQVIQF 105


>Z83316-7|CAB05890.1|  134|Caenorhabditis elegans Hypothetical
           protein B0379.6 protein.
          Length = 134

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 48  GLWWSIQTHLQKEGKNYKENCTSSGMCR 131
           GLW   + HL K G+    NC   G  R
Sbjct: 48  GLWRQKRAHLMKGGRRLTRNCVGCGGSR 75


>U43282-2|AAY86313.1|   73|Caenorhabditis elegans Hypothetical
           protein T22E5.7 protein.
          Length = 73

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 211 FVPSSSRHHQAQSAYNASGPPATSPCSLHIPDEVQFSL 98
           F+   +   + ++ +  +G P T PCS+ + +E  FSL
Sbjct: 10  FIRRQTDDGEMKAYWGKAGAPITLPCSISLFNEESFSL 47


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 112 LRLECADCKVRSQVALKRCKHFE 180
           + +E A+CK R + + K+CK  E
Sbjct: 152 MAVELAECKKRDEESRKKCKQLE 174


>Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical
           protein T01G9.6b protein.
          Length = 235

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 211 FVPSSSRHHQAQSAYNASGPP 149
           FVP SSRH     +Y  +G P
Sbjct: 144 FVPRSSRHQHTDGSYFGTGFP 164


>Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical
           protein T01G9.6a protein.
          Length = 234

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 211 FVPSSSRHHQAQSAYNASGPP 149
           FVP SSRH     +Y  +G P
Sbjct: 143 FVPRSSRHQHTDGSYFGTGFP 163


>M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase II
           beta subunit protein.
          Length = 234

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 211 FVPSSSRHHQAQSAYNASGPP 149
           FVP SSRH     +Y  +G P
Sbjct: 143 FVPRSSRHQHTDGSYFGTGFP 163


>AF036694-7|AAB88345.2|  116|Caenorhabditis elegans Hypothetical
           protein CD4.7 protein.
          Length = 116

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 200 LFSSPPSSKCLQRFRATCDLTLQSAHSRRSTIFFVV 93
           L S+PPS K  ++F A C +  +   +R    FF +
Sbjct: 72  LSSAPPSEKPARKFCAVCGIISKYCCTRCGANFFQI 107


>Z96048-2|CAB09420.1|  155|Caenorhabditis elegans Hypothetical
           protein F57A10.2 protein.
          Length = 155

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 57  WSIQTHLQKEGKNY 98
           WS  THLQ E K+Y
Sbjct: 101 WSANTHLQPEKKHY 114


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 212 ICPFLFSSPPSSKCLQRFRATCD 144
           +CPF F++PP  K  Q   A CD
Sbjct: 680 LCPFCFNNPPFEKMPQ--GAGCD 700


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 208  VPSSSRHHQAQSAYNASGPPATSPCSLHIP 119
            VPS     Q++S   A  PPA+SP +  IP
Sbjct: 1602 VPSYFPVEQSKSVTQAPIPPASSPSAPSIP 1631


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,250,260
Number of Sequences: 27780
Number of extensions: 87191
Number of successful extensions: 268
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)