Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J21
(328 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 51 5e-08
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 34 0.005
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 33 0.008
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 31 0.044
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 31 0.058
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.058
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.18
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 0.41
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 27 0.54
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 0.54
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 27 0.54
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 0.54
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 27 0.72
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 27 0.72
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 0.72
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 27 0.95
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 0.95
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 27 0.95
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 1.3
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 26 1.7
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 1.7
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 2.2
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 25 2.2
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 2.9
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 2.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 3.8
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 3.8
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 3.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 3.8
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 25 3.8
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 24 5.1
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 24 5.1
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 24 5.1
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 24 5.1
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 24 6.7
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 24 6.7
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 24 6.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 24 6.7
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 24 6.7
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 24 6.7
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 24 6.7
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 23 8.8
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 23 8.8
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 23 8.8
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 23 8.8
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 23 8.8
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 23 8.8
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 50.8 bits (116), Expect = 5e-08
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +3
Query: 12 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYSKFTSVRRDRNDFWEGIKA 191
K+KG+ N SQ +A F DG Y++ GSE+ ++IW + T ++ E KA
Sbjct: 485 KFKGHANAQSQNRAYFDDDGNYVICGSEDHQVFIWDLPPQHMHKTKKKKH-----EHFKA 539
Query: 192 HNAVVTCAVFAPKPDHMIRMIS 257
+T AVFAP + +S
Sbjct: 540 SVRPITAAVFAPTKTKQLLTLS 561
Score = 26.2 bits (55), Expect = 1.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIW 116
FS DG+Y+ G +++ + IW
Sbjct: 246 FSRDGRYLAVGGQDRILRIW 265
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 34.3 bits (75), Expect = 0.005
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 15 YKGYVNVSSQIKASFSHDGKYIVSG--SENQCIYIWKT 122
+KGY ++ FS DG+++ SG S N C + WKT
Sbjct: 480 FKGYSCSGYSLEVGFSPDGRFVFSGDSSGNACFWDWKT 517
Score = 29.1 bits (62), Expect = 0.18
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 15 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYS 137
+KG+ S ++ F G ++SGS + I IW+ YHD S
Sbjct: 262 WKGHTKGISCLRF-FPISGHLLLSGSMDNQIKIWEVYHDRS 301
Score = 26.6 bits (56), Expect = 0.95
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 12 KYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDY 134
K+ + + S + + +GK I S + CIY++ Y Y
Sbjct: 432 KFVADIAMHSMPRVALRPNGKSIACQSLDNCIYVYSAYEKY 472
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIWKT 122
SFS DG+ +S S ++ I +W T
Sbjct: 317 SFSQDGRSFLSTSFDKTIKLWDT 339
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 33.5 bits (73), Expect = 0.008
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +3
Query: 9 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYSKFTSVRRDRNDFWEGIK 188
C ++ + S + S S D + +VSGS ++ I IW + K+T +D W
Sbjct: 97 CTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGN-CKYTITDGGHSD-W---- 150
Query: 189 AHNAVVTCAVFAPKPDHM 242
V+C F+P PD++
Sbjct: 151 -----VSCVRFSPNPDNL 163
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 31.1 bits (67), Expect = 0.044
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 39 SQIKASFSHDGKYIVSGSENQCIYIWK 119
S +FS DGKY+VSGS + I +W+
Sbjct: 460 SVYSVAFSPDGKYLVSGSLDNTIKLWE 486
Score = 30.7 bits (66), Expect = 0.058
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 45 IKASFSHDGKYIVSGSENQCIYIWKTYHDYSKFT 146
+ + S DGK+I+SGS+++ I W +S+ T
Sbjct: 516 LSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQLT 549
Score = 30.3 bits (65), Expect = 0.077
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIW 116
+FS DGKY+ +G E+Q I IW
Sbjct: 341 AFSPDGKYLATGVEDQQIRIW 361
Score = 27.1 bits (57), Expect = 0.72
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIW 116
FS DGK +VSGS ++ + +W
Sbjct: 384 FSKDGKTLVSGSGDRTVCLW 403
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIW 116
FS DG++I +GS ++ I IW
Sbjct: 425 FSPDGQFIAAGSLDKVIRIW 444
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 30.7 bits (66), Expect = 0.058
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 15 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 116
Y G N+ ++++SF+ + SGSE+ +Y+W
Sbjct: 218 YIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLW 251
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.058
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIW 116
+FS DGKY+V+G+E++ I +W
Sbjct: 367 AFSPDGKYLVTGTEDRQIKLW 387
Score = 28.7 bits (61), Expect = 0.24
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIW 116
FSH+G++IVSGS ++ +W
Sbjct: 410 FSHNGRFIVSGSGDRTARLW 429
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.18
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIWKTYHDY 134
+S DG++++SGS++ + +W +++Y
Sbjct: 53 WSADGEFLLSGSDDTRLIVWDVFNEY 78
Score = 27.5 bits (58), Expect = 0.54
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 15 YKGYVNVSSQIKASF-SHDGKYIVSGSENQCIYIW 116
Y G+ NV S +F + +Y++SGS++ +IW
Sbjct: 664 YYGHCNVESIKNVNFYGQNDEYVMSGSDDGRFFIW 698
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 0.41
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIW 116
FS +G+Y+ SGS+++ + IW
Sbjct: 82 FSPNGQYLASGSDDRVVIIW 101
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 27.5 bits (58), Expect = 0.54
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 33 VSSQIKASFSHDGKYIVSGSENQCIYIW 116
V+ ++ + S D YI+SGS+ + +W
Sbjct: 437 VNGRVLSRLSEDNSYIISGSDTNEVVLW 464
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 0.54
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIW 116
SFS DG Y++S E+ + +W
Sbjct: 305 SFSQDGNYLLSRGEDNALRVW 325
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 27.5 bits (58), Expect = 0.54
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 12 KYKGYVNVSSQIKASFSHDGKY--IVSGS---ENQCIYIWKTYHDYSK 140
KY +++ I+ S++ +Y V+G + C ++W YH YSK
Sbjct: 399 KYSKCLHILPLIEVGLSYEVRYGTRVTGQSIRDASCYFVWSFYHCYSK 446
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 27.5 bits (58), Expect = 0.54
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIW 116
SFSH+G+Y+ +G + + IW
Sbjct: 482 SFSHNGRYLATGDTSGGVCIW 502
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 27.1 bits (57), Expect = 0.72
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 27 VNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYSKFTSVRRDRNDF 173
+ V +I A +H +V+ + + W T+ DY KF + R + DF
Sbjct: 586 LGVRYEIAAEHAHSCSILVAQTAFKKDGHWHTHIDYPKFFELIRTKKDF 634
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 0.72
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIWKT 122
SFS+D +Y+ SGSE++ + I T
Sbjct: 243 SFSYDSRYLASGSEDRYVDIADT 265
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 0.72
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 9 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYSKFTSVR 155
C G+ SQ+K ++ KY+ S S+++ I IW D+ K SVR
Sbjct: 90 CTLFGHYRGISQVK--WATGSKYLASASDDKTIRIW----DFEKRCSVR 132
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 0.95
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIWKTYHDYSKFTSVRRDRND 170
FS D +YI SGS++ + +W+ S S+R R +
Sbjct: 324 FSMDAQYIFSGSDDSNVRLWRA--RASSRASIRSTREE 359
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 0.95
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +3
Query: 18 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYSKFTSVRRDRNDFWEGIKAHN 197
KG+ + IK FS D +YI+S ++ + + H+ ++ D N+F IKAH+
Sbjct: 575 KGHSLTVTTIK--FSPDDRYILSAGRDRLVCL----HEQAENLL---DYNNF-ASIKAHS 624
Query: 198 AVVTCAVFAPK 230
++ A +APK
Sbjct: 625 RIIWDASWAPK 635
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 0.95
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 60 SHDGKYIVSGSENQCIYIW 116
S DGKY++S S N + +W
Sbjct: 30 STDGKYLLSASTNDVLLVW 48
Score = 23.4 bits (48), Expect = 8.8
Identities = 6/23 (26%), Positives = 15/23 (65%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIWKT 122
+ + DG + +GS ++C+ +W +
Sbjct: 281 ALTSDGTMLATGSWDECVRLWSS 303
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 1.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIW 116
FS DG+Y+ S SE++ + +W
Sbjct: 202 FSSDGRYLCSVSEDRTLRLW 221
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIYIWKT-YHDYSK 140
+S DG I+S +E+QC+ W + D SK
Sbjct: 54 WSPDGSTILSLTEDQCLNCWNVPFSDLSK 82
Score = 23.8 bits (49), Expect = 6.7
Identities = 7/18 (38%), Positives = 16/18 (88%)
Frame = +3
Query: 57 FSHDGKYIVSGSENQCIY 110
F++DG+Y+++G +N C++
Sbjct: 163 FTNDGEYLIAGDKN-CLH 179
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 9 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYSKFTS 149
C+ G+ + S + +S DG YI +G + + +WK+ + T+
Sbjct: 98 CQLTGHKD--SIVAIDWSFDGTYIATGGMDSQVRLWKSSTGFEFITA 142
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIWKTYHDYSK 140
S S DG+ IV+G+ ++ + WK ++ K
Sbjct: 386 SMSPDGQSIVTGAGDETLRFWKLFNKKPK 414
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 134 VVMVSLPYVYALVLGAADDVLPVVRERGLDLTGNVHVT 21
+V++ PYVY L L + V V+R DL +H++
Sbjct: 351 MVLIGRPYVYGLALEGSSGVSHVIRCLLGDLELTLHLS 388
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 2.9
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 12 KYKGYVNVSSQIKA-SFSHDGKYIVSGSENQCIYIWK-TYHD 131
++ +V SS + + SFS+D K +VSG + + W TY +
Sbjct: 563 QHVSFVKHSSIVYSLSFSYDNKILVSGGADTDVNFWDLTYRN 604
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 2.9
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +3
Query: 51 ASFSHDGKYIVSGSENQCIYIWKTYHDYSKF 143
A F G Y SG ++ I +W + D +
Sbjct: 56 ARFDPSGSYFASGGMDRQILLWNVFGDVKNY 86
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 24.6 bits (51), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 9 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 116
C + YV V +F H+ +I+S S++Q I IW
Sbjct: 92 CGHMDYVRV-----CTFHHEYPWILSCSDDQTIRIW 122
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 24.6 bits (51), Expect = 3.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 234 DHMIRMISEREEEARLATNGPDDKEDEVN 320
D+ I S++ EE + ++GP + EDE++
Sbjct: 242 DNSIPENSDKIEEVSIESSGPSEVEDEMS 270
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 3.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 66 DGKYIVSGSENQCIYIWK 119
D YIVSGS + + +WK
Sbjct: 456 DQPYIVSGSRDHTLRVWK 473
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 3.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 105 IYIWKTYHDYSKFTSVRRDRN 167
I +WK + +YS S+ ++RN
Sbjct: 355 ILLWKDFPNYSTLLSIMQERN 375
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 3.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 15 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 116
++G+ N + I +F DGK++ + SE+ + +W
Sbjct: 79 FEGHTNNVTAI--AFHCDGKWLATSSEDGTVKVW 110
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 24.2 bits (50), Expect = 5.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 192 HNAVVTCAVFAPKPDHMIRMISER 263
H+ +VTC +APK + ++ +R
Sbjct: 54 HDKIVTCVDWAPKSNRIVTCSQDR 77
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 24.2 bits (50), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 36 SSQIKASFSH-DGKYIVSGSENQCIYIW 116
SS ++ + H DGK +++ + +YIW
Sbjct: 261 SSALQTALFHPDGKRVIAAGRRKYMYIW 288
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 5.1
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIW 116
S+SH+G+Y+ S S+++ I+
Sbjct: 220 SYSHNGRYLASASKDKTAIIF 240
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 84 SGSEN--QCIYIWKTYHDYSKFTSV 152
SG++N C + WK+ H Y + SV
Sbjct: 388 SGADNGSMCFWDWKSGHKYQELQSV 412
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 63 HDGKYIVSGSENQCIYIWKTYHDYS 137
HD + + SG ++ I IWK DY+
Sbjct: 93 HD-QVLASGGDDSKIMIWKVPEDYT 116
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +3
Query: 18 KGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYH 128
+G+ +QIK ++HDG + S ++++ I +W +++
Sbjct: 7 QGHERPLTQIK--YNHDGDLLFSCAKDKVINVWFSHN 41
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = +3
Query: 21 GYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYSKFTSVRR 158
GY + S DG Y+ +Q +W+ Y D+ + R
Sbjct: 22 GYSTEIQIVGTVTSSDGSYVEYEIVHQKRSVWRRYSDFESLVKLMR 67
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 23.8 bits (49), Expect = 6.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 138 KFTSVRRDRNDFWEGIKAHN 197
K+ V+ D DFW+ + H+
Sbjct: 238 KYIDVKTDSEDFWDASEEHS 257
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 15 YKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIW 116
YK Y + S + F +VSGS + I IW
Sbjct: 255 YKLYGHSGSVLCLDFCRRRNLLVSGSSDSTIIIW 288
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 23.8 bits (49), Expect = 6.7
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Frame = +3
Query: 9 CKYKGYVNVSSQIKASFSHDGKYIVSGSENQCIYIWKTYHDYSKF-TSVRRDRNDFWEGI 185
C Y + ++ A FS D I G + I +W D S + +D +
Sbjct: 316 CMYTFHHTNNNMNCAEFSPDSTMIACGFQESYIRLWSIKADKKSLPKSTSVEDSDGSVRL 375
Query: 186 KAHNAVVTCAVFAPKPDHMIRMISEREEEARL 281
+H+ V F+ PD+ + + ARL
Sbjct: 376 LSHSGPVYGTTFS--PDNKYLLSCSEDASARL 405
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIW 116
+FS D KY++S SE+ +W
Sbjct: 386 TFSPDNKYLLSCSEDASARLW 406
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/32 (28%), Positives = 13/32 (40%)
Frame = +3
Query: 66 DGKYIVSGSENQCIYIWKTYHDYSKFTSVRRD 161
DG + SG + + IW KFT +
Sbjct: 315 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 346
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 36 SSQIKA-SFSHDGKYIVSGSENQCIYIW 116
SS I+ +F G +++SGS ++ + +W
Sbjct: 189 SSVIRGLTFEPTGSFLLSGSRDKTVQVW 216
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 51 ASFSHDGKYIVSGSENQCIYIW 116
ASFS DG+ I + S + + +W
Sbjct: 395 ASFSPDGRCIATASFDSSVRLW 416
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 5 EVQIQGLRERFQSDQGLVLARREVHRQRLREP 100
EV+++ +E + G V+ARR + + REP
Sbjct: 1250 EVRLEKYKELSTAPPGAVMARRLMTKDPRREP 1281
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 23.4 bits (48), Expect = 8.8
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +3
Query: 69 GKYIVSGSENQCIYIWKTYHDYS 137
G++I++ + ++ +Y+WK YS
Sbjct: 125 GEWIIACTSSRHVYVWKHASKYS 147
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 23.4 bits (48), Expect = 8.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 134 VVMVSLPYVYALVLGAADDVLPVVRERGLDLTGNVHVTLVFAPR 3
V + S P + ++G LP + E D+T N H PR
Sbjct: 502 VQIFSQPVLSKYIVGLDPKKLPKILELSKDITVNAHPNQPSRPR 545
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 23.4 bits (48), Expect = 8.8
Identities = 7/30 (23%), Positives = 19/30 (63%)
Frame = +3
Query: 54 SFSHDGKYIVSGSENQCIYIWKTYHDYSKF 143
S++ +G+Y++SG + + +W+ + +F
Sbjct: 269 SWALNGEYLLSGGQEGVLVLWQMETSHRQF 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,121,365
Number of Sequences: 5004
Number of extensions: 19694
Number of successful extensions: 159
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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