Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J20
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    31   0.058
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   1.2  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    24   8.8  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    24   8.8  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    24   8.8  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 31.1 bits (67), Expect = 0.058
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -2

Query: 370 ELNGINVEELIEAGRGKLSSM 308
           ELNG N+EELI AG  KLS++
Sbjct: 45  ELNGKNIEELIAAGNEKLSTV 65


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 370 ELNGINVEELIEAGRGKLSSM 308
           ELNG +++ELI AG  KL+++
Sbjct: 45  ELNGKDIDELIAAGNEKLATV 65


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 53  IPPI--YFIETYSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTEA 184
           +PP+  +F  T +  CY    +W  +   +  P+ F  K ++   A
Sbjct: 454 MPPVKPHFDTTLADPCYKLAESWTNSAKNSDDPSKFSSKDIENWSA 499


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 77  TYSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTEAHVV 193
           T + SC + N  W   TS   TP+  + + +  T + V+
Sbjct: 340 TATMSCQATNSAWMAATSLPPTPSEAVCECMDSTRSCVI 378


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 68  FIETYSPSCYSYNINWNKTTSAASTPTLFIMKLVKK 175
           F E    S  +   NW+  T A ST  LF++ +  K
Sbjct: 287 FCEQKDLSYTTVKDNWDNITVAPSTNVLFLLSVPSK 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,037,754
Number of Sequences: 5004
Number of extensions: 13982
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)