Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J19
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    87   1e-18
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    29   0.16 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   0.85 
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   1.5  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   1.5  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    25   2.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   3.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   4.5  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   4.5  
SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    24   7.9  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    24   7.9  

>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 86.6 bits (205), Expect = 1e-18
 Identities = 39/71 (54%), Positives = 53/71 (74%)
 Frame = +2

Query: 140 LSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTLPY 319
           + +E+L    DE+ SRTRLL+N+IK+MKSE  R++HE     +KI+EN EKI  NK LPY
Sbjct: 27  IEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPY 86

Query: 320 LVSNVIELLDV 352
           LV NV+E+LD+
Sbjct: 87  LVGNVVEILDM 97


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 16/71 (22%), Positives = 36/71 (50%)
 Frame = +2

Query: 137 ALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTLP 316
           ALS+  + +PT+      +LL    ++M ++ +++        D + E  +K  ++  LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465

Query: 317 YLVSNVIELLD 349
            L+  ++ LL+
Sbjct: 466 MLMERLVGLLE 476


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 164 PTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRE 280
           P+ EI S+    DNE  ++  + + IS+E+  +ND   E
Sbjct: 61  PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE 99


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +2

Query: 200 DNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTLPYLVSNVI 337
           DN++  +++ +M  + +    N+K+ E    +  +KTL ++ S ++
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIV 745


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 236 RISHEHQAQ-NDKIRENTEKIRVNKTLPYLVSNVIELLD 349
           R+S EH A  N    E+      N+TL  L  N++E+ D
Sbjct: 579 RVSDEHSASSNFNEIESQASFEQNQTLDILSENIVEIQD 617


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 235 HDFAFHYFNFVVQESCTADDFI 170
           H++  H  + +++E  T DDFI
Sbjct: 207 HEYRIHNADILIREDITVDDFI 228


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +2

Query: 194  LLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTLPYLVSNVIELLD 349
            L+D   +IM++E  R  +  +   + I  + +    N +LP+     I+L+D
Sbjct: 1114 LIDGHSEIMENERRRPKYRIRLSGNPILGDGKSDNQNMSLPFYRGEYIQLID 1165


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 116  HLGGWRKALSEEVLRMPTDEIISRTRLLDNEIKIMKSE----VMRISHEHQAQNDKIREN 283
            HL  + +A   +   +    ++   +  D E+K +  E    ++ +  E +  ND    N
Sbjct: 959  HLSNYAEAKLAQERELEQTRVLISDQSQDGELKELLEEKENALIMMEEEMRQVNDA---N 1015

Query: 284  TEKIRVNKTLPYLVSN 331
            TE +RVN TL   + N
Sbjct: 1016 TELLRVNATLKSQLKN 1031


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 140 LSEEVLRMPTDEI--ISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTL 313
           L   +L+  +DE+  I+ T L+DN ++   ++   +S +   +   I    E++  ++  
Sbjct: 312 LDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMAYDEEN 371

Query: 314 PYL 322
           PY+
Sbjct: 372 PYV 374


>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 128 WRKALSEEVLRMPTDEIISRTRLLDNEIKIMK 223
           WR  + +E   +P   IIS+    D+ IKI+K
Sbjct: 47  WRLQILKEGFTVPMTGIISQYLKTDDHIKIVK 78


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +2

Query: 170 DEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTE 289
           D  + R   + +E++ ++  +   S  H A N ++RE ++
Sbjct: 325 DTRLKRLEHVQSELQAVEQAIQEASAVHDAFNQRVREESK 364


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 238 DFPRTSSSKRQNKRKHGEN*SE 303
           D+PR S  K  N ++H +N +E
Sbjct: 192 DYPRYSERKSLNSKRHVDNYNE 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,000
Number of Sequences: 5004
Number of extensions: 25506
Number of successful extensions: 85
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)