Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J19
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1126 - 34284733-34284810,34285151-34285291,34285424-342855...    77   4e-15
06_01_0511 + 3688788-3688880,3689050-3689166,3689959-3690066,369...    67   4e-12
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891...    29   1.4  
04_03_0232 - 13049649-13052807                                         27   4.1  
02_02_0370 + 9509212-9509293,9509905-9511721                           27   4.1  
09_04_0613 + 18953761-18953932,18954672-18954799,18954885-189549...    27   5.5  

>02_05_1126 -
           34284733-34284810,34285151-34285291,34285424-34285543,
           34285787-34285874,34285962-34286080,34286437-34286628,
           34286802-34286993,34287309-34287416,34287983-34288099,
           34288214-34288315
          Length = 418

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 31/69 (44%), Positives = 53/69 (76%)
 Frame = +2

Query: 146 EEVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTLPYLV 325
           +++  M T++I+  TRLLDNE +++K E+ R + E ++  +KI+EN EKI++NK LPYLV
Sbjct: 9   DQLASMSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLV 68

Query: 326 SNVIELLDV 352
            N++E+L++
Sbjct: 69  GNIVEILEM 77


>06_01_0511 +
           3688788-3688880,3689050-3689166,3689959-3690066,
           3690634-3690825,3691010-3691201,3691484-3691602,
           3691740-3691827,3692155-3692274,3692378-3692518,
           3693065-3693142
          Length = 415

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 31/72 (43%), Positives = 52/72 (72%)
 Frame = +2

Query: 137 ALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTLP 316
           A  +++  M T++I+  +RLLDNEI+    E+ R + E ++  +KI+EN EKI++NK LP
Sbjct: 6   AEDDQLASMSTEDIVRASRLLDNEIR---DELQRTNLELESFKEKIKENQEKIKLNKQLP 62

Query: 317 YLVSNVIELLDV 352
           YLV N++E+L++
Sbjct: 63  YLVGNIVEILEM 74


>02_04_0115 -
           19888252-19888406,19888507-19888573,19888867-19889101,
           19889179-19889255,19889350-19889415,19889517-19889565,
           19889651-19889701,19889799-19889851,19889973-19890024,
           19890126-19890214,19890308-19890393,19890603-19890659,
           19890742-19890919,19891852-19891908,19892209-19892439
          Length = 500

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 197 LDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIR 298
           LDN +  +++EV  +S + QA +++I +  EK+R
Sbjct: 242 LDNGLSALQAEVENLSLKEQALDERISDMREKLR 275


>04_03_0232 - 13049649-13052807
          Length = 1052

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +2

Query: 113 VHLGGWRKALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEK 292
           +H  GW    +  VL+     + S   LL     +MK+ + +I H   +     R   + 
Sbjct: 9   IHFDGWGGLGASAVLKAIATRLKSSASLLGEAATVMKAGMDKIIHVDCSLWQNTRAVQKA 68

Query: 293 IRVNKTLPYLVSNVIELLD 349
           I ++  LP    +VI L D
Sbjct: 69  IAIDLNLP---QHVIALFD 84


>02_02_0370 + 9509212-9509293,9509905-9511721
          Length = 632

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 283 VFSYFVVLSLMFVGNPHDFAFHYFNFVVQESCTADDFISRHTKDFLAK 140
           VF+Y  ++  +      D A+H+++ + +E C  D  +  +  +FL K
Sbjct: 300 VFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGK 347


>09_04_0613 +
           18953761-18953932,18954672-18954799,18954885-18954956,
           18955033-18955146,18955547-18955615,18955691-18955747,
           18956262-18956315,18956387-18956449,18956543-18956605,
           18956803-18956967,18957111-18957266,18957315-18957416
          Length = 404

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +2

Query: 149 EVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRE 280
           E L+  +DE   R +  ++ +K+ + E+MR+  E   Q ++++E
Sbjct: 161 EKLQKTSDEQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKE 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,365,866
Number of Sequences: 37544
Number of extensions: 141998
Number of successful extensions: 353
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)