Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J19
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 101 2e-22
AC024792-2|AAF60680.2| 813|Caenorhabditis elegans Hypothetical ... 33 0.076
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z81037-6|CAB02748.2| 414|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z78012-10|CAJ55252.1| 183|Caenorhabditis elegans Hypothetical p... 27 3.8
Z78012-9|CAB01419.1| 185|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z75954-10|CAJ55258.1| 183|Caenorhabditis elegans Hypothetical p... 27 3.8
Z75954-9|CAB00110.1| 185|Caenorhabditis elegans Hypothetical pr... 27 3.8
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 27 3.8
U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81123-3|CAB03366.1| 102|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 26 6.6
U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical pr... 26 6.6
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 101 bits (241), Expect = 2e-22
Identities = 45/72 (62%), Positives = 61/72 (84%)
Frame = +2
Query: 137 ALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTLP 316
A+ EE+L+M T+++ SRT LLDNEI+IM+SEV RI+H ++I+ENTE+I+VNKTLP
Sbjct: 21 AIDEEILKMSTEDLKSRTHLLDNEIRIMRSEVQRINHSATTLKERIKENTERIKVNKTLP 80
Query: 317 YLVSNVIELLDV 352
YLVSNV+ELLD+
Sbjct: 81 YLVSNVVELLDL 92
>AC024792-2|AAF60680.2| 813|Caenorhabditis elegans Hypothetical
protein Y48G1A.4 protein.
Length = 813
Score = 32.7 bits (71), Expect = 0.076
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = +2
Query: 80 PNNNGYNFRR*VHLGGWRKALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQA 259
P N G N + H GG K E V E ISR ++ N I K+++ R HE Q
Sbjct: 141 PGNLGSNMVKVAHFGGGEKTAEEHV-----REKISREDMISN--LIAKTKLAR--HEKQQ 191
Query: 260 QNDKIRENTEKI 295
Q D++ TE +
Sbjct: 192 QKDELELMTESL 203
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 149 EVLRMPTDEI---ISRTRLLDNEIKIMKSEVMRISHEHQAQND 268
E LR+ D + TR L +E+K ++SE+ R H+AQ D
Sbjct: 197 EALRVELDGVRQGFHETRELADEVKHLRSELQRQQEIHRAQFD 239
>Z81037-6|CAB02748.2| 414|Caenorhabditis elegans Hypothetical
protein C17E4.10 protein.
Length = 414
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 223 KRSHEDFPRTSSSKRQNKRKHGEN*SEQDTTL 318
+R+ DF SS +++N+R ++ +E DTT+
Sbjct: 107 RRTFADFEDRSSEEKENRRIEEDDDTEADTTI 138
>Z78012-10|CAJ55252.1| 183|Caenorhabditis elegans Hypothetical
protein F58H1.7b protein.
Length = 183
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 172 ISRHTKDFLAKRFSPSSQMDLS 107
+S H KDFL K F P ++ +LS
Sbjct: 91 MSAHGKDFLVKVFGPKAKAELS 112
>Z78012-9|CAB01419.1| 185|Caenorhabditis elegans Hypothetical
protein F58H1.7a protein.
Length = 185
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 172 ISRHTKDFLAKRFSPSSQMDLS 107
+S H KDFL K F P ++ +LS
Sbjct: 93 MSAHGKDFLVKVFGPKAKAELS 114
>Z75954-10|CAJ55258.1| 183|Caenorhabditis elegans Hypothetical
protein F58H1.7b protein.
Length = 183
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 172 ISRHTKDFLAKRFSPSSQMDLS 107
+S H KDFL K F P ++ +LS
Sbjct: 91 MSAHGKDFLVKVFGPKAKAELS 112
>Z75954-9|CAB00110.1| 185|Caenorhabditis elegans Hypothetical
protein F58H1.7a protein.
Length = 185
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 172 ISRHTKDFLAKRFSPSSQMDLS 107
+S H KDFL K F P ++ +LS
Sbjct: 93 MSAHGKDFLVKVFGPKAKAELS 114
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 134 KALSEEVL----RMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRV 301
K L +E L + P DEI++ + E+K +++ E Q + D I ++ +++ V
Sbjct: 507 KRLEDEALAQQQQKPKDEIVAESEKKLKELKERNKQLVMEKSEIQRELDNINDHLDQVLV 566
Query: 302 NK 307
K
Sbjct: 567 EK 568
>U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical
protein F41H10.4 protein.
Length = 575
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +2
Query: 137 ALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKIRVNKTL 313
AL E L++ T+ L +I+++KSE R+S + Q ++ +N EK+ ++ L
Sbjct: 280 ALQSEKLKL-TEISQQEISGLKKKIEVLKSENHRLSSQIQQNTNEAAKNHEKLLEDRVL 337
>Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical
protein T27F6.8 protein.
Length = 301
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 202 VQESCTADDFISRHTKDFLAKR 137
+ E+C +DD RH+K ++A R
Sbjct: 102 INEACASDDAFERHSKAYVAIR 123
>Z81123-3|CAB03366.1| 102|Caenorhabditis elegans Hypothetical
protein T14D7.3 protein.
Length = 102
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 170 DEIISRTRLLDNEIKIMKSEVMRISHEHQAQNDKIRENTEKI 295
D+ I RTR N +KI+ E ++ E Q + D + E +K+
Sbjct: 15 DQKIMRTRQELNSVKIIMKENVQKIMERQGKLDDLVERAQKL 56
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
protein C05A9.1 protein.
Length = 1283
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 351 TSNSSITLETR*GSVLFTLIFSVFSLILSF 262
+SN + ++ R GSV+ TL+ + ++I+SF
Sbjct: 824 SSNVTAAVDDRLGSVIMTLVAILLAVIMSF 853
>U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical
protein K06A1.5 protein.
Length = 534
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 155 LRMPTDEIISRTRLLDNEIKIMKSEVMRISHE 250
LR+ TD I+ + +L+NE+ +K E I+ E
Sbjct: 109 LRIETDAIVKKMTVLENELAELKEENSVINTE 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,630,920
Number of Sequences: 27780
Number of extensions: 138870
Number of successful extensions: 537
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -