Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J19
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    24   0.60 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    24   0.60 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    24   0.60 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   4.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.4  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = +2

Query: 170 DEIISRTRLLDNEIKIMK---------SEVMRISHEHQAQNDKIRENTEKIRVNKTLPYL 322
           DEI+   RLL+N  K +          +E+ R+  +  A + K   + ++  + K + +L
Sbjct: 35  DEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTDKQREVIKKVIKFL 94

Query: 323 VSNVIELLD 349
           V N  EL D
Sbjct: 95  VENKPELWD 103


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = +2

Query: 170 DEIISRTRLLDNEIKIMK---------SEVMRISHEHQAQNDKIRENTEKIRVNKTLPYL 322
           DEI+   RLL+N  K +          +E+ R+  +  A + K   + ++  + K + +L
Sbjct: 35  DEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTDKQREVIKKVIKFL 94

Query: 323 VSNVIELLD 349
           V N  EL D
Sbjct: 95  VENKPELWD 103


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = +2

Query: 170 DEIISRTRLLDNEIKIMK---------SEVMRISHEHQAQNDKIRENTEKIRVNKTLPYL 322
           DEI+   RLL+N  K +          +E+ R+  +  A + K   + ++  + K + +L
Sbjct: 35  DEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTDKQREVIKKVIKFL 94

Query: 323 VSNVIELLD 349
           V N  EL D
Sbjct: 95  VENKPELWD 103


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 75  NTQITMATTLEDKSIWEDGEKRLARK 152
           NT+  M T L +  IWE  E+ LA+K
Sbjct: 229 NTKNGMKTLLSETDIWE-VEQILAKK 253


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 230 VMRISHEHQAQNDKIRENTEKIRVNKTLPYLVSN 331
           + R + E  AQND+  +    +++ + LP+ V +
Sbjct: 334 LQRQNLEMVAQNDRTLQMIAGMKIKEELPHFVGS 367


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 125 GWRKALSEEVLRMP 166
           GW+  LSE++L  P
Sbjct: 677 GWKGMLSEKILAEP 690


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 202 VQESCTADDFISRHTK 155
           + +SC    FI+ HTK
Sbjct: 484 IHKSCICVRFIAEHTK 499


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 202 VQESCTADDFISRHTK 155
           + +SC    FI+ HTK
Sbjct: 484 IHKSCICVRFIAEHTK 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,395
Number of Sequences: 438
Number of extensions: 1701
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)