Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J17
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   0.90 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   2.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   8.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   8.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 77  TKETKWQKHQQLVSIWAQPTLVWVCSS 157
           T+  K+ KH+    +W    LVW  S+
Sbjct: 289 TQPIKYAKHKNNRRVWLTILLVWAISA 315


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 128 QPTLVWVCSSMGKLRSSPMTRATELRPRTLRSPTLS 235
           QPTL  +CS  G    S     T   P T  + T+S
Sbjct: 74  QPTLRLLCSIAGGTSESQWEDVTGSTPLTFVNDTVS 109


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 160 HAGTHPHKSRLC 125
           H G  PHK  +C
Sbjct: 170 HTGERPHKCTVC 181


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 186 VIGDDLNFPMLEHT 145
           +IG D + PM+ H+
Sbjct: 478 IIGKDYSLPMVNHS 491


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 101 HQQLVSIWAQPTLVWVCSSMGKLRS 175
           H  L  +W Q  L W  S    + S
Sbjct: 83  HVMLKLMWEQSHLTWKSSEFDSINS 107


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   HEGQSRTFTC*VRPTSCSTT 61
           HE  SRT T    PT+ +TT
Sbjct: 717 HEEVSRTSTAGQFPTNVATT 736


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 317 ANLKMPPYKPT*NSGLS 367
           A LK+P YKP    G S
Sbjct: 880 AILKIPSYKPASTPGCS 896


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,489
Number of Sequences: 438
Number of extensions: 1943
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)