Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J16
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    31   0.067
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   2.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.3  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    26   3.3  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.8  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   5.8  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    25   7.7  

>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 31.5 bits (68), Expect = 0.067
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 244 YSKNTVQS-HRN*IAASIHFW--TVSHRAWTR-THAAIS--LQSRTVPTSSSTSYATKME 405
           Y+ N+  S H      S   W  + S +AW R T  ++S  ++S+T+P   STSY  ++E
Sbjct: 18  YNGNSFNSIHATSFGMSPQSWGNSFSGQAWLRDTIPSLSNVVESQTIPEEDSTSYLNRLE 77

Query: 406 TESLCSSLR 432
            E+ C   R
Sbjct: 78  -EAFCRDFR 85


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 243 VFKKYCAKSPQLNSCINSLLDGVSPCVDPNARGHLASVKNSTNQL 377
           V K     +PQL+  + +LL+ +SP  D +    ++ +K++T+++
Sbjct: 103 VDKSLLGPTPQLSRRVLNLLEDMSPIADSHV-DQISDIKHNTSEI 146


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 355 SRTVPTSSSTSYATKMETESLCSSLRAVLS 444
           S +VP+SSS+ +++ M T  L SS   V S
Sbjct: 147 SSSVPSSSSSYHSSSMTTSGLSSSASIVSS 176


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 113 TIFFALVCEHLF*LFPLIF 57
           T+F+AL+ +HL  + P+I+
Sbjct: 85  TLFYALISQHLIEMIPIIY 103


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 304 TVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETES--LCSSLRAVLSACKRRLIQS 471
           T+S   ++ T A+ +  S   P+SSST+ ++   + S  + SS+ + +S+     + S
Sbjct: 128 TISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSS 185


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +3

Query: 57  EDKREQLKQMLTDQCKKYGA--EDKVATVDAA-GRAFVECVKELVDVNQLKNEIEEAKPN 227
           E +R+ LKQ   +      +  E ++ +++++   +  ECV     +N+L ++I+E K  
Sbjct: 543 ELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLK 602

Query: 228 GALDEVFKKY 257
             L+E  KKY
Sbjct: 603 --LNEANKKY 610


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 387 ICYKDGDRIALFIAESGPECLQEKAD 464
           +CY+  D   + IA +GP+ ++ + D
Sbjct: 11  VCYQPEDTTFIIIASNGPDVMRWRKD 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,892
Number of Sequences: 5004
Number of extensions: 30579
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)