Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J16
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    30   0.82 
02_03_0134 - 15596379-15597689                                         29   1.9  
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    28   3.3  
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026     27   7.6  
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161...    27   7.6  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    27   7.6  

>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +3

Query: 24  IGVLAQDYQLPEDKREQLKQMLTDQCKKYGAEDKVATVDAAGRAFVECVKELVDVNQLKN 203
           +  ++ + + P +    + QML D       +D V T  A+G+A V  + E++D  ++++
Sbjct: 443 LATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIES 502

Query: 204 -EIE-EAKP---NGALDEVFKKYCAKSPQ 275
            ++E E  P       D++   +C K+ +
Sbjct: 503 GKLELETVPFDLRTVCDDILSLFCGKAQE 531


>02_03_0134 - 15596379-15597689
          Length = 436

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 57  EDKREQLKQMLTDQCKKYGAEDKVATVDAAG---RAFVECVKELVDVNQLKNEIEEAKPN 227
           EDK E++ ++++++  +    +     D A     + V+ VKE +D ++LK    E +  
Sbjct: 277 EDKNEEVVELISEEKHQVPDNNSFNGRDNADIGINSKVQAVKEAIDNSELKEAANETELK 336

Query: 228 GALDEVFKKYCAKSPQLNSCINS 296
            A+DE          +L   +N+
Sbjct: 337 EAVDETELNEVVSESELYKDVNT 359


>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 292 IHFWTVSHRAWTRTHAAISLQSRTVPTSSSTSYATKMETESL 417
           +HFW +   +   T+A + L S  VP S  T YA  + T +L
Sbjct: 709 LHFWVILFASLITTNAYVMLVSALVP-SYITGYAVVIATTAL 749


>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
          Length = 453

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +3

Query: 183 DVNQLKNEIEEAKPNGALDEVFKKYCAKSPQLNSCIN 293
           ++ ++K+  E   PNG +++++ +  +K+P +   IN
Sbjct: 389 EIKKVKHYFEYEDPNGPVNQIWHQVSSKAPLIKLLIN 425


>03_06_0753 +
           36015026-36015256,36015780-36015885,36016132-36016192,
           36016278-36016573,36016654-36016793,36016880-36016954,
           36017044-36017134,36017677-36017880,36018409-36018453,
           36018745-36018830
          Length = 444

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 171 KEL--VDVNQLKNEIEEAKPNG 230
           KEL  VD NQLKN + +  PNG
Sbjct: 244 KELGTVDTNQLKNNMADISPNG 265


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 186  VNQLKNEIEEAKPNGALDEVFKKYCAKSPQLNSCINSLLDGVSPCVDPN 332
            + +L  EIEE    G LDE +     K  +L   +  L + +S  VDPN
Sbjct: 962  LRKLTAEIEEEPIQGWLDEHYHLMRNKVCELGVRLKFLEEAISGSVDPN 1010


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,156
Number of Sequences: 37544
Number of extensions: 203650
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)