Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J14
         (116 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    24   3.2  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    22   9.8  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 53  HYYFLYFNHSQVFN 12
           H YFL+F+ S +FN
Sbjct: 622 HEYFLHFSSSYIFN 635


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -1

Query: 86  KNIKKNARYALHYYFLYFNHSQVFNLI 6
           ++I   +R A+ Y+F++  HS + +++
Sbjct: 443 RDIPDRSRVAVGYHFIHDKHSLITDVV 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,818
Number of Sequences: 5004
Number of extensions: 4473
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 43080638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)