Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J14
         (116 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   0.79 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   1.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   5.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   5.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   5.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 0.79
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 82  ILKKMQGMHYITTFYTSTTHRFLI 11
           +L+KMQ M     ++ STT  F++
Sbjct: 335 LLRKMQEMSIEVPYWISTTTSFVL 358


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 115 YIMLKLQYNIRILKKMQGMHYIT 47
           ++++   Y I  L +  G+HY T
Sbjct: 310 FLLMSFGYCIATLLEFAGVHYFT 332


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 56  LHYYFLYFNHSQVFN 12
           L Y FL FN  Q F+
Sbjct: 179 LDYIFLIFNQFQDFS 193


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 56  LHYYFLYFNHSQVFN 12
           L Y FL FN  Q F+
Sbjct: 179 LDYIFLIFNQFQDFS 193


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 56  LHYYFLYFNHSQVFN 12
           L Y FL FN  Q F+
Sbjct: 179 LDYIFLIFNQFQDFS 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,392
Number of Sequences: 438
Number of extensions: 348
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 19
effective length of database: 138,021
effective search space used:  2622399
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)