Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J13
(212 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 1.0
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 25 1.4
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 1.4
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 24 2.4
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 24 3.1
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi... 24 3.1
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 23 4.2
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 23 4.2
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 23 5.5
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha... 23 7.3
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 23 7.3
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 23 7.3
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 23 7.3
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M... 22 9.6
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 22 9.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 22 9.6
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 22 9.6
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 22 9.6
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
Frame = -2
Query: 88 WGLSSDWPW--RSCFSFLQ 38
WGLSSD+P+ + FSFL+
Sbjct: 400 WGLSSDYPFIQTASFSFLE 418
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 90 TPLITERDIINEDIKDANDYSISRKRDKVISKRTP 194
TP EDIKDA D+ ++R + V + P
Sbjct: 155 TPFWPFTSFNEEDIKDAKDFDVTRPIEAVFTYVDP 189
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 206 IFHSWSTFTNHFVSFTRN*IVISILDIFI 120
+ SWS F FV F + +SIL++ I
Sbjct: 1197 LLRSWSIFICAFVEFVKEDATLSILELKI 1225
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 108 SQ*SAESGAFPLTGPGEVVSHFFKALNFCI 19
SQ S+ G+F + G + SHF K+ +F +
Sbjct: 713 SQISSAIGSFAVGCLGNMYSHFIKSSSFAV 742
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 198 FLEYVY*SLCLFYAKLNS 145
FLEYVY L L Y K S
Sbjct: 407 FLEYVYKCLVLLYGKWRS 424
>SPAC1782.05 |||phosphotyrosyl phosphatase activator
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 23.8 bits (49), Expect = 3.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 203 FHSWSTFTNHFVSFTRN*IVISILDIFINYVSLSNQRSLGPF 78
F SW FT+N ++ +F+ YV L RSL F
Sbjct: 145 FMSWLLILKQLGIFTKNDYPALVVRVFVKYVEL--MRSLQIF 184
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 114 IINEDIKDANDYSISRKRDKVISKRTPGME 203
I++ED D++ S+S +DK + P +
Sbjct: 787 IVSEDGADSDTISVSDDKDKKVEGHRPSQD 816
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 78 ERPQTPLITERDIINEDIKDAND 146
E TP+ ER++I+ D KD D
Sbjct: 309 EEEYTPIKDERELIDPDQKDVFD 331
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 70 WPWRSCFSFLQGVEFLH 20
WP + CF L+ VE H
Sbjct: 254 WPDKRCFEILEKVEKAH 270
>SPCC1020.07 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 45 NEKQLLQGQSEERPQTPLITERDI 116
N+K+ QGQ+E P+ L+ E I
Sbjct: 162 NDKRKAQGQAEILPENCLVFEDSI 185
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -3
Query: 87 GAFPLTGPGEVVSHFFKALNFCINFLV 7
G F L G + K ++C+NF++
Sbjct: 217 GTFDLQGINNQIESLRKLADYCLNFVL 243
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 204 FPFLEYVY*SLCLFYAKLNSH 142
F FL+YV C++ LN+H
Sbjct: 162 FDFLDYVLFFDCIYNPHLNAH 182
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 48 EKQLLQGQSEERPQTPLITERDIINEDIKDANDYSISRKRDK 173
E+ + EE P+ ++ ED++ AN ++SRK D+
Sbjct: 106 EEDSVFDSDEEHEVKPMFSDDSGDEEDLELANMEAMSRKLDE 147
>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 201
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 209 KIFHSWSTFTN 177
+ +HSW+TF N
Sbjct: 106 RAYHSWNTFVN 116
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 81 FPLTGPGEVVSHFFKALNFCINFLVP 4
FP +GP +++S+FF + ++ L P
Sbjct: 86 FP-SGPMDLISYFFLKQRYALSSLKP 110
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 22.2 bits (45), Expect = 9.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 3 SARGN*CRNSTP*RNEKQLLQGQSEERPQT-PLITERDIINEDIKDANDYSISRK 164
S R N ++ P +N L ++ ++ P I ER++ EDI+ N+ S K
Sbjct: 26 SKRNNSQSSTEPRKNATSLDSKKTTKKGVALPEIAERELTQEDIEFFNENPSSLK 80
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 48 EKQLLQGQSEERPQTPLITERDIINEDIKDANDYSI 155
EK+L + P TERDII + KD D I
Sbjct: 141 EKRLFLITDNDHPAWDA-TERDIILQRAKDLRDLDI 175
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = -1
Query: 209 KIFHSWSTFTNHFVSFTRN*IVISILDIFINYVSLSNQRSL 87
K+F ++ FV TR+ ++ + ++FI ++ Q L
Sbjct: 408 KLFQAYRKTLTQFVRLTRSSPLVGLKNLFIKWLRRYTQVEL 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,193
Number of Sequences: 5004
Number of extensions: 10978
Number of successful extensions: 43
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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