Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J13
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    29   0.39 
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    27   2.7  
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    26   3.6  
01_06_0225 - 27675363-27675464,27675727-27675823,27676145-276762...    26   4.8  
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479...    25   8.3  

>07_01_0070 +
           515247-515397,516198-516265,516360-518456,518750-518900,
           519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 51  KQLLQGQSEERPQTPLITERDIINEDIKDANDYSISRKRDKVISKRTPGMENLE 212
           K LLQ +  E P  P I + D  N D+ D N    S    K   + TP     E
Sbjct: 464 KGLLQNKKREEPSMPKIYDGDHDNGDVTDVNLRLNSTSNTKQAPEGTPSFTTEE 517


>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 72  SEERPQTPLITERDIINEDIKDANDYSISRKRDKVISKRTPGMEN 206
           S+E+P      +  ++NE I+D    +   + DK   +R PG++N
Sbjct: 313 SDEKPD-----DSSVLNEKIEDDETLAEKAEDDKTSDERVPGVKN 352


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 21  CRNSTP*RNEKQLLQGQSEERPQTPLITERDIINEDIKDANDY--SISRKRDKVI 179
           C  S   R+E  + QGQSEE   T  + ++  +++D +    +   ISR++D+V+
Sbjct: 219 CFASCENRSELLMEQGQSEEDDMTASLMDQFEVDDDNRCWASFLERISREQDQVL 273


>01_06_0225 -
           27675363-27675464,27675727-27675823,27676145-27676218,
           27677361-27677444,27677728-27678489,27679515-27679565
          Length = 389

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 93  PLITERDIINEDIKDANDYSISRKRDKVISKRTPGMENLE 212
           PL+ E  +    I+  +D   +R+  + ++K  PG +NLE
Sbjct: 233 PLLDENQLRTRQIE--SDEEFARRLQEQLNKEQPGSQNLE 270


>02_04_0625 -
           24547435-24547569,24547674-24547742,24547871-24547997,
           24548086-24548209,24548714-24548832,24548953-24549044,
           24549124-24549329,24549429-24549534,24549636-24549740,
           24549836-24549942,24550030-24550253,24550341-24550468,
           24550945-24551022,24551338-24552012,24552655-24552798,
           24552985-24553064,24553958-24554029,24554124-24554343,
           24554460-24554590,24555118-24555243,24555567-24555695,
           24556156-24556318,24556408-24556545,24557198-24557317,
           24557521-24557682,24557751-24557876,24558172-24558342,
           24558435-24558590,24559061-24559408
          Length = 1526

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 48  EKQLLQGQSEERPQTPLITERDIINEDIKDAN-DYSISRKRDKVISKRTPG 197
           +K L    ++  P   ++    + N   KDAN + SIS+  D +I + TPG
Sbjct: 803 KKDLASNHTDPLPSQEVVGWTAVENMPSKDANAEPSISKDEDNMI-EETPG 852


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,594,772
Number of Sequences: 37544
Number of extensions: 59673
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)