Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J13
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical ...    28   1.0  
AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z72516-1|CAA96687.2|  156|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF022975-9|AAB70669.1|  344|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF106578-1|AAC78197.1|  252|Caenorhabditis elegans Hypothetical ...    25   7.3  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    25   9.7  

>AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical
           protein C17H12.4 protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 66  GQSEERPQTPLITERDIINEDIKDANDYS--ISRKRDKVISKRTP 194
           G++ ERPQ     E  IIN  +KD  +Y   I+  +++ IS R P
Sbjct: 483 GETGERPQMKTKFEEKIINYWLKDMVEYDKHITELKNQKISIRKP 527


>AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical
           protein Y24D9A.6 protein.
          Length = 157

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 209 KIFHSWSTFTNHFVSFTRN*IVISILDIFINYVSLSNQRSLGPFL 75
           KIF+S + FT HF+SF     + SI+D     +   N R    F+
Sbjct: 25  KIFYSKTCFT-HFLSFLFQFFLNSIIDQLAKVLKFGNCRKFSIFI 68


>Z72516-1|CAA96687.2|  156|Caenorhabditis elegans Hypothetical
           protein T25G3.1 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 45  NEKQLLQGQSEERPQTPLITER-DIINEDIKDANDYSISRKRDKVISK 185
           +E  L++ + E+RPQ  ++ E+ D+  E+++   +     + DK+I++
Sbjct: 60  DETDLMRMKEEDRPQVVVLNEKTDLTKEELEKELEEKKKEEGDKLIAE 107


>AF022975-9|AAB70669.1|  344|Caenorhabditis elegans Hypothetical
           protein K09C6.2 protein.
          Length = 344

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 19  DAEIQRLEEMRNNFSRASQRKGP 87
           D EI+ LEEM +   +   RKGP
Sbjct: 240 DDEIEYLEEMLDKIDKQKDRKGP 262


>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 19  DAEIQRLEEMRNNFSRASQRKG 84
           D EI+ LEEM +N  +   RKG
Sbjct: 249 DDEIEYLEEMLDNIEKQKDRKG 270


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 19  DAEIQRLEEMRNNFSRASQRKG 84
           D EI+ LEEM +N  +   RKG
Sbjct: 249 DDEIEYLEEMLDNIEKQKDRKG 270


>U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical
           protein B0507.7 protein.
          Length = 380

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 99  ITERDIINEDIKDANDYSISRKRDKVISKRTPGMENL 209
           + ERD I E +    D +I  K      ++ PG +NL
Sbjct: 344 VAERDYIQETLSRQMDLTIVSKNSHRAIEKPPGYDNL 380


>AF106578-1|AAC78197.1|  252|Caenorhabditis elegans Hypothetical
           protein H11L12.1 protein.
          Length = 252

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 42  RNEKQLLQGQSEERPQTPLITERDIINEDIKDANDYSISRKR 167
           R E+Q LQG   ++ Q P   +RD+     + AN   +SRKR
Sbjct: 180 RKEQQQLQGAQAKKQQAP---QRDV----NRKANHQKLSRKR 214


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = +3

Query: 48  EKQLLQGQSEERPQTPLITERDIINEDIKD-----ANDYSISRKRDK 173
           E  LLQ      P TP+ T   +    ++D       D+ IS  RDK
Sbjct: 166 ESGLLQQYDLRNPDTPIHTNESVHRYSVQDLQLSPRGDFLISASRDK 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,148,184
Number of Sequences: 27780
Number of extensions: 58761
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)