Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J12
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 142 1e-35
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 134 5e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 77 6e-16
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 70 9e-14
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.053
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.070
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.49
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 0.86
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 1.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 1.5
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 3.5
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 3.5
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 24 6.1
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 24 6.1
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 24 8.0
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 24 8.0
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 24 8.0
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 142 bits (344), Expect = 1e-35
Identities = 60/88 (68%), Positives = 71/88 (80%)
Frame = +1
Query: 94 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 273
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 274 HVPRAVFVDLEPTVVDEVRTGTYRQMFH 357
+VPR+++VDLEP V+D+VRTG YR +FH
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFH 88
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 134 bits (323), Expect = 5e-33
Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 5/93 (5%)
Frame = +1
Query: 94 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 258
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 259 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQMFH 357
TG GK VPR+++VDLEP V+D+VRTG Y+ +FH
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFH 92
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 77.4 bits (182), Expect = 6e-16
Identities = 35/87 (40%), Positives = 55/87 (63%)
Frame = +1
Query: 97 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 276
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 277 VPRAVFVDLEPTVVDEVRTGTYRQMFH 357
+PRA+ +DLEP VV+ + + TY +++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYN 87
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 70.1 bits (164), Expect = 9e-14
Identities = 34/87 (39%), Positives = 47/87 (54%)
Frame = +1
Query: 94 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 273
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 274 HVPRAVFVDLEPTVVDEVRTGTYRQMF 354
+VPRAV VDLEP +D V++G + +F
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLF 85
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.1 bits (67), Expect = 0.053
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 134 SRSEMPAGSCIALSTASNLM--VRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSIL 304
SRS P + ++S A+ Q+T P+ V + TP T SS L S+ P+ SSSIL
Sbjct: 346 SRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSIL 402
Query: 305 N 307
N
Sbjct: 403 N 403
Score = 27.9 bits (59), Expect = 0.49
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 262
+T S+S+ + P + S + S ++++S L +T + + T TP T SS
Sbjct: 1929 STPITSSSVLNSSTPITSSTV-VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSV-- 1985
Query: 263 ELASTFPVPSSSILN 307
L S+ P+ SSS+LN
Sbjct: 1986 -LNSSTPITSSSVLN 1999
Score = 27.1 bits (57), Expect = 0.86
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 265
+T S+S+ + P + S + + ++++S L +T + V T+ S SS+
Sbjct: 2373 STSITSSSVLNSSTPITSSTV-VNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSS--V 2429
Query: 266 LASTFPVPSSSILN 307
L S+ P+ SSS+LN
Sbjct: 2430 LNSSTPITSSSVLN 2443
Score = 26.6 bits (56), Expect = 1.1
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 262
+T S+S+ + P + S + S +++++ L +T + + T TP T SS
Sbjct: 405 STPITSSSVLNSSTPITSSSI-LNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV-- 461
Query: 263 ELASTFPVPSSSILN 307
L S+ P+ SSS+LN
Sbjct: 462 -LNSSTPITSSSVLN 475
Score = 26.6 bits (56), Expect = 1.1
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 262
+T S+S+ + P + S + S ++++S L +T + V T TP T S+A
Sbjct: 1077 STPITSSSVLNSSTPITSSTV-LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTA-- 1133
Query: 263 ELASTFPVPSSSILN 307
L ++ P+ SSS+LN
Sbjct: 1134 -LNTSTPITSSSVLN 1147
Score = 26.2 bits (55), Expect = 1.5
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 262
+T S+S+ + P + S + S ++++S L +T + V + TP T S+A
Sbjct: 1221 STPITSSSVLNSSTPITSSSI-LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA-- 1277
Query: 263 ELASTFPVPSSSILN 307
L ++ P+ SSS+LN
Sbjct: 1278 -LNTSIPITSSSVLN 1291
Score = 26.2 bits (55), Expect = 1.5
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 265
+T S+S+ + P + S + S +++++ L +T S + ++ + SS+
Sbjct: 3177 STAITSSSIVNSSTPITSSSV-LNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSS--V 3233
Query: 266 LASTFPVPSSSILN 307
L S+ P+ SSS+LN
Sbjct: 3234 LNSSTPITSSSVLN 3247
Score = 26.2 bits (55), Expect = 1.5
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +2
Query: 101 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTF 280
S +L T S S + + + I STA N +T S + ++ + SS+ L S+
Sbjct: 3303 STTLNTSTPITSSSVLNSSTAITSSTALNTST--PITSSSVLNSSTAITSSSI--LNSST 3358
Query: 281 PVPSSSILN 307
PV SSS+LN
Sbjct: 3359 PVTSSSVLN 3367
Score = 25.8 bits (54), Expect = 2.0
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 277
S +L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 1875 STALNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 1929
Query: 278 FPVPSSSILN 307
P+ SSS+LN
Sbjct: 1930 TPITSSSVLN 1939
Score = 25.8 bits (54), Expect = 2.0
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 277
S +L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 2067 STALNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 2121
Query: 278 FPVPSSSILN 307
P+ SSS+LN
Sbjct: 2122 TPITSSSVLN 2131
Score = 25.8 bits (54), Expect = 2.0
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 262
+T S+S+ + P + S + + ++++S L +T + V T TP T S+A
Sbjct: 2721 STPITSSSVLNSSTPITSSTV-VNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTA-- 2777
Query: 263 ELASTFPVPSSSILN 307
L ++ P+ SSS+LN
Sbjct: 2778 -LNTSTPITSSSVLN 2791
Score = 25.4 bits (53), Expect = 2.6
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 277
S L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 939 STGLNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 993
Query: 278 FPVPSSSILN 307
P+ SSS+LN
Sbjct: 994 TPITSSSVLN 1003
Score = 25.4 bits (53), Expect = 2.6
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 86 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 259
+T S+S+ + P S S + + + I ST N +T S V + TP T S+A
Sbjct: 1533 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSSVVNSSTPITSSTA- 1589
Query: 260 PELASTFPVPSSSILN 307
L ++ P+ SSS+LN
Sbjct: 1590 --LNTSTPITSSSVLN 1603
Score = 25.0 bits (52), Expect = 3.5
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 140 SEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 307
S S ++++S L +T S + T TP T SS L S+ P+ SSSILN
Sbjct: 374 SPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSV---LNSSTPITSSSILN 427
Score = 24.6 bits (51), Expect = 4.6
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 86 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 259
+T S+++ + P S S + + + I ST N +TR S + + TP T S+
Sbjct: 549 STPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTST--PITRYSVLNSSTPITSSTV- 605
Query: 260 PELASTFPVPSSSILN 307
L S+ P+ SSS+LN
Sbjct: 606 --LNSSTPITSSSVLN 619
Score = 24.6 bits (51), Expect = 4.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 158 SCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 307
S ++++S L +T + + T TP T SS L S+ P+ SSS+LN
Sbjct: 608 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSV---LNSSTPITSSSVLN 655
Score = 24.6 bits (51), Expect = 4.6
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 170 LSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 307
++++S L +T + + T TP T SS L S+ P+ SSSILN
Sbjct: 720 ITSSSVLNSSTPITSSTALNTSTPITSSSV---LNSSTPITSSSILN 763
Score = 24.6 bits (51), Expect = 4.6
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 86 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 259
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 1989 STPITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 2045
Query: 260 PELASTFPVPSSSILN 307
L ++ P+ SSS+LN
Sbjct: 2046 --LNTSTPITSSSVLN 2059
Score = 24.2 bits (50), Expect = 6.1
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 86 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 259
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 453 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 509
Query: 260 PELASTFPVPSSSILN 307
L ++ P+ SSS+LN
Sbjct: 510 --LNTSTPITSSSVLN 523
Score = 24.2 bits (50), Expect = 6.1
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 86 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 259
+T S+S+ + P S S + + + I ST N +T S + + TP T S+
Sbjct: 753 STPITSSSILNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSSVLNSSTPITSSTV- 809
Query: 260 PELASTFPVPSSSILN 307
L S+ P+ SSS+LN
Sbjct: 810 --LNSSTPITSSSVLN 823
Score = 24.2 bits (50), Expect = 6.1
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 262
+T S+++ + P + S + S +++++ L +T S + + TP T S+
Sbjct: 1041 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV-- 1097
Query: 263 ELASTFPVPSSSILN 307
L S+ P+ SSS+LN
Sbjct: 1098 -LNSSTPITSSSVLN 1111
Score = 24.2 bits (50), Expect = 6.1
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = +2
Query: 86 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 265
+T S++ + P + S + S A++++S + +T S + ++ + SS+
Sbjct: 3069 STPITSSTALNTSTPITSSSV-LNSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSI-- 3125
Query: 266 LASTFPVPSSSILN 307
L S+ P+ SSSILN
Sbjct: 3126 LNSSTPITSSSILN 3139
Score = 23.8 bits (49), Expect = 8.0
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 101 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTF 280
S +L T S S + + + I STA N +T S + ++ + SS L ++
Sbjct: 663 STALNTSTPITSSSVLNSSTPITSSTALNTST--PITSSSVLNSSTAITSSTA--LNTST 718
Query: 281 PVPSSSILN 307
P+ SSS+LN
Sbjct: 719 PITSSSVLN 727
Score = 23.8 bits (49), Expect = 8.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 277
S +L T S S + + + I ST N +T + V + TP T S+A L ++
Sbjct: 867 STALNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA---LNTS 921
Query: 278 FPVPSSSILN 307
P+ SSS+LN
Sbjct: 922 TPITSSSVLN 931
Score = 23.8 bits (49), Expect = 8.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 277
S +L T S S + + + I ST N +T + V + TP T S+A L ++
Sbjct: 1023 STALNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA---LNTS 1077
Query: 278 FPVPSSSILN 307
P+ SSS+LN
Sbjct: 1078 TPITSSSVLN 1087
Score = 23.8 bits (49), Expect = 8.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 101 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 277
S +L T S S + + + I ST N +T + V + TP T S+A L ++
Sbjct: 1803 STALNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA---LNTS 1857
Query: 278 FPVPSSSILN 307
P+ SSS+LN
Sbjct: 1858 TPITSSSVLN 1867
Score = 23.8 bits (49), Expect = 8.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 140 SEMPAGSCIALSTA----SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 307
S P S AL+T+ S+ +V S ST ++ L S+ P+ SSS+LN
Sbjct: 3416 SSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLN 3475
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.070
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 134 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 307
S S + + + ST S+L ++PS T+ ST SSA P S+ + SSS+++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.49
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +2
Query: 113 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPS 292
++ A+ + S+ + S + Q +PSGVE T ++R++A+ + ST + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 293 SS 298
+
Sbjct: 72 EA 73
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 0.86
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +2
Query: 77 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 256
K LN V+ +A + S P+ +C + + + N + + TTP+T S
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 257 RPELASTFPVPSSSILNPL*LT 322
+ + T P +S+ N L L+
Sbjct: 142 KKIESITIP-DHASVYNDLPLS 162
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 215 PSGVETTPSTRSSARPELASTFPV 286
P+ VETTPST +SA + + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 1.5
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 128 PESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 307
P S S + LST+S ++ T SG PST SS+ P +S P +S+L+
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPST-SSSTPS-SSIISSPMTSVLS 540
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 3.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 223 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 128
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 3.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 252 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGL 124
EE EG TP +T+R D+V++ + AG++D+ S L
Sbjct: 320 EEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISEL 362
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 24.2 bits (50), Expect = 6.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 83 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 256
LNT C+ + + + +E A S I+ TA NL+ C L+ P +P+ +++A
Sbjct: 132 LNTFCLGKTAPSDKNRYTTTECLACSKISNETAENLLFLC-LSSPWIFRASPTLQNTA 188
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 6.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 252 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVY 112
E+ V GVV + + W L++ LD + + G+ D+ L ++
Sbjct: 399 EDSVIGVVGADNQISLWDLSVELDEEEQDSRAAEGLQDVPPQLMFIH 445
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 183 DAVLKAIQLPAGISDLDSGLANV 115
+AVLK I GI + D+GLA +
Sbjct: 55 EAVLKRINDTVGIKESDTGLAPI 77
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 23.8 bits (49), Expect = 8.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 357 MKHLSVCASADLVNYSGFKIDEDGTG-NVLASSG 259
M+H+ C S DL N S F + + T +L SSG
Sbjct: 221 MEHIKRCTSLDLTN-SVFSLSKVNTDCAILTSSG 253
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 203 QLTRPSGVETTPSTRSSARPELASTF 280
Q T PSG +TPST + +L T+
Sbjct: 117 QFTTPSGPVSTPSTYVATYNDLPCTY 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,520
Number of Sequences: 5004
Number of extensions: 31414
Number of successful extensions: 163
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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