Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J11
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    89   2e-19
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   1.6  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   3.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   5.0  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   6.7  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   8.8  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    24   8.8  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   8.8  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    24   8.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 89.0 bits (211), Expect = 2e-19
 Identities = 40/61 (65%), Positives = 47/61 (77%)
 Frame = +2

Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
           LF  R   F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 359 T 361
           T
Sbjct: 86  T 86


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 180 YSRREQISLLLARTSSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCRRQSTSSP 341
           +SR E++   +   S QP    +S   ++I +S    +  SV S   R    SP
Sbjct: 546 FSRLEELGENIPAISKQPSYLSISSSSKSINSSPSPSIQLSVSSSISRDKNLSP 599


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 175 PSIREENKFLCYWPGHPANQRSIPFRAMAEIYSHPA 282
           PS +++ K+L Y        ++  FR M+++ S+PA
Sbjct: 138 PSAKQQRKYLQYQISEDDAIKNRMFRRMSDLESYPA 173


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 300 SVVSKCRRQSTSSPRH*IKPQTKV 371
           S V   R Q+TSSP + ++PQ KV
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKV 205


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 297 NTAF*RWMRIYFGHRTKRDRSLVGWMSW 214
           N  F R +R+YF    + DRSL  +  W
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQW 198


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 172 YNLLGLNFLHHKW 134
           YN  GL++L H+W
Sbjct: 881 YNAAGLSYLRHEW 893


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVL 298
           L+EK TN  A+  +++P   L+ +++    + ++ Q AVL
Sbjct: 425 LYEKITNHMALAMEVEP---LNEWLQLIHILLLEAQTAVL 461


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 12  SFGVRNRSRIYSWPLD 59
           SF + N+ R+Y+W L+
Sbjct: 291 SFAIDNKGRVYAWGLN 306


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 262 EIYSHPASKGCVTASSQSA 318
           E++SHP   GC + SS  +
Sbjct: 251 EVFSHPFLMGCTSLSSMDS 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,943
Number of Sequences: 5004
Number of extensions: 25296
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)