Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J11
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 87 4e-18
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 86 1e-17
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 86 1e-17
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 28 2.7
10_08_0934 + 21667688-21667860,21667995-21668093,21668528-216687... 27 3.6
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 3.6
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 6.2
10_08_0178 - 15475614-15475850,15476716-15476808 26 8.2
09_04_0320 - 16656620-16657243,16658198-16659106 26 8.2
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 87.0 bits (206), Expect = 4e-18
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = +2
Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 355
LFEKR F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDK 83
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +2
Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 355
LFEKR F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDK 82
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +2
Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 355
LFEKR F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDK 66
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 197 NFFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP 325
N +GQD + ++ +V+ Y I Q+ + +L RLK PP
Sbjct: 351 NNSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPP 394
>10_08_0934 +
21667688-21667860,21667995-21668093,21668528-21668736,
21668786-21668925
Length = 206
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 159 PRRL*TLYSRREQISLLLARTSSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCRRQ 326
P L TL+ + ++LLL R+S + + ++ + F ++ CYS +K R +
Sbjct: 140 PALLQTLFPEKIILALLLHRSSQKLFVISLAYSQKAFFQLLLQCCCYSTTNKTREK 195
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 223 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 330
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 289 LLTLDANIFRPSHETG*ISGWL 224
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
>10_08_0178 - 15475614-15475850,15476716-15476808
Length = 109
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 257 WPKYIRIQRQKAVLQ-RRLKVPPPINQFTQTLDK 355
W Y + RQKAV + R++ PPP +T+ +
Sbjct: 4 WGAYTEVARQKAVGRGRKVAAPPPNFPLVKTMPR 37
>09_04_0320 - 16656620-16657243,16658198-16659106
Length = 510
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 253 AMAEIYSHPASKGCVTASSQSAAANQPVHPD 345
AMAE+ HPA+ A + A +P HPD
Sbjct: 320 AMAELLRHPAAMSRARAELRDALGAKP-HPD 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,572,376
Number of Sequences: 37544
Number of extensions: 170794
Number of successful extensions: 521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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