Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J11
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 94 3e-20
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 94 3e-20
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 94 3e-20
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 94 3e-20
Z81071-4|CAB03015.2| 267|Caenorhabditis elegans Hypothetical pr... 27 4.3
U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensi... 26 7.5
U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensi... 26 7.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 26 9.9
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 26 9.9
AC025726-2|AAO21421.1| 174|Caenorhabditis elegans Male abnormal... 26 9.9
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 26 9.9
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 93.9 bits (223), Expect = 3e-20
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +2
Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 352
LFEKR F IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 93.9 bits (223), Expect = 3e-20
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +2
Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 352
LFEKR F IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 93.9 bits (223), Expect = 3e-20
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +2
Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 352
LFEKR F IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 93.9 bits (223), Expect = 3e-20
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +2
Query: 179 LFEKRTNFFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 352
LFEKR F IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
>Z81071-4|CAB03015.2| 267|Caenorhabditis elegans Hypothetical
protein F28F8.4 protein.
Length = 267
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 147 RKLSPRRL*TLYSRREQISLLLARTSSQPEIYPVSCDGRNIFASSVKRL 293
+KL +L + +EQI +LL R+++ I SC G++ F+ +VK L
Sbjct: 183 KKLDVEKLKIVGFHQEQIPMLLKRSATIKSINITSCFGQD-FSEAVKIL 230
>U61949-2|AAB03152.1| 884|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform a
protein.
Length = 884
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 193 NKFLCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAAN 327
N+ LCY+ P Q+ + YS+ ++ TA S+++ N
Sbjct: 406 NRMLCYYLSEPVFQKGLRLYLKRFQYSNAVTQDLWTALSEASGQN 450
>U61949-1|AAY44009.1| 948|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform b
protein.
Length = 948
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 193 NKFLCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAAN 327
N+ LCY+ P Q+ + YS+ ++ TA S+++ N
Sbjct: 470 NRMLCYYLSEPVFQKGLRLYLKRFQYSNAVTQDLWTALSEASGQN 514
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 246 VSCDGRNIFASSVKRLCYSVVSKC 317
V C +N+F + R C+ V KC
Sbjct: 136 VDCSSQNVFMCADGRQCFDVSKKC 159
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 246 VSCDGRNIFASSVKRLCYSVVSKC 317
V C +N+F + R C+ V KC
Sbjct: 136 VDCSSQNVFMCADGRQCFDVSKKC 159
>AC025726-2|AAO21421.1| 174|Caenorhabditis elegans Male abnormal
protein 20, isoform b protein.
Length = 174
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 240 YPVSCDGRNIFASSVKRLCYSVVSKCRRQSTSSPRH*IKPQTK 368
Y ++ G N+FA L S S+CR ST+S +P T+
Sbjct: 62 YNINDTGENVFAKKQLVLSESEESECR--STASDERLCRPSTR 102
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 240 YPVSCDGRNIFASSVKRLCYSVVSKCRRQSTSSPRH*IKPQTK 368
Y ++ G N+FA L S S+CR ST+S +P T+
Sbjct: 62 YNINDTGENVFAKKQLVLSESEESECR--STASDERLCRPSTR 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,949,492
Number of Sequences: 27780
Number of extensions: 139004
Number of successful extensions: 340
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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