Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J10
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   134   3e-33
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   134   3e-33
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   0.98 
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   2.3  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   5.2  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   5.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.2  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    24   6.9  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   6.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    24   6.9  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    24   9.1  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  134 bits (325), Expect = 3e-33
 Identities = 64/113 (56%), Positives = 77/113 (68%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
           MGAY+Y++EL +KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGL 375
           I+RI               TYGKP   GVN LK  R+ +  AEERVGR C  L
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNL 113


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  134 bits (325), Expect = 3e-33
 Identities = 64/113 (56%), Positives = 77/113 (68%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
           MGAY+Y++EL +KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGL 375
           I+RI               TYGKP   GVN LK  R+ +  AEERVGR C  L
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNL 113


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 123 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 37
           LPHS   EKS N+ Q   +QL  ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 141 TSQLAILPHSYTQEKSHNIAQLFPIQLL 58
           +SQL  L H+Y +EKS N   L  IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 2   HEAEGSITDSSRWARTD 52
           + AE  +TD SRW R D
Sbjct: 401 YTAETELTDKSRWTRLD 417


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 103 LRIRVWQYRQLTRMHRAPRPTRPD 174
           L+  +W Y  L R++  PR   PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 182 EGLDTVPSKVMLSSESACAVVAVNAQCP 265
           E L+ +P KV++     CAV  V    P
Sbjct: 841 EKLEDIPGKVVVFERKICAVYPVEGSSP 868


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 314 FSWLTPWLLG 285
           + WL+PWLLG
Sbjct: 194 YCWLSPWLLG 203


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 291 LGFAVGSSLGHWA 253
           LG  +GS+ GHWA
Sbjct: 299 LGLNIGSTTGHWA 311


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = -3

Query: 246  ATTAHADSEDNITLLGTVSKPSRLVWPRGPGSAVHTSQLAILPHSYTQEKSHNIA-QLFP 70
            A+T   +   N+ + G  S P    W     SAV    ++          S N +    P
Sbjct: 771  ASTVSRNPFHNLKISGA-SSPVSNFWESEFASAVFPRSISKTTSLSVNNSSVNPSLDSEP 829

Query: 69   IQLLYISVRAHLDESVIDPSAS 4
            +QL  +    H D SV+D S S
Sbjct: 830  VQLSNMEEPQHQDSSVVDVSTS 851


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 179 REGLDTVPSKVMLSSESACAVVAVNAQCPRELPTANPRAMV 301
           R G  T P+KV L  E      + N Q P     +NP  MV
Sbjct: 648 RNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMV 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,332
Number of Sequences: 5004
Number of extensions: 28714
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)