Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J10
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 138 1e-33
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 136 4e-33
04_03_0563 - 17195605-17196681 29 0.92
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 1.2
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 28 2.8
10_08_0133 + 15100049-15101836,15103344-15103382 27 3.7
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159 27 3.7
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 27 3.7
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 27 3.7
05_03_0591 + 15892772-15893412,15893478-15893910 27 4.9
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 4.9
10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579... 27 6.5
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 27 6.5
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 26 8.6
08_01_0413 - 3679887-3681254 26 8.6
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 26 8.6
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 26 8.6
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 138 bits (335), Expect = 1e-33
Identities = 63/113 (55%), Positives = 79/113 (69%)
Frame = +1
Query: 37 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
MGAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGL 375
++R+ YGKPK G+ QLK RN +S+AEER GR+ GGL
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGL 113
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 136 bits (330), Expect = 4e-33
Identities = 62/112 (55%), Positives = 78/112 (69%)
Frame = +1
Query: 40 GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVI 219
GAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGYV+
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 220 FRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGL 375
+R+ YGKPK G+ QLK RN +S+AEER GR+ GGL
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGL 218
>04_03_0563 - 17195605-17196681
Length = 358
Score = 29.5 bits (63), Expect = 0.92
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 140 VCTALPGPRGQTRREGLDTVPSKVMLSSESACAVVAV 250
V ALP PR T+P+ V++ S S C +V V
Sbjct: 147 VVEALPSPRIMAVHMPFSTLPASVVVDSSSGCKIVYV 183
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 324 ASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPR 163
AS +LV + GFA G++ A A AH DS+ ++ L + L W R
Sbjct: 55 ASAARLVASAVAGFAQGAAAAAIAAGAIGAHVDSDRDLRHLSRLRYKRWLWWTR 108
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 309 LVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRG 160
LV +G V S GHW ++ + AD+E +L + + +RL+ RG
Sbjct: 303 LVFHSRMGLCVQISRGHWLWSVWESIADAELAADILHSSATSTRLIPIRG 352
>10_08_0133 + 15100049-15101836,15103344-15103382
Length = 608
Score = 27.5 bits (58), Expect = 3.7
Identities = 24/84 (28%), Positives = 33/84 (39%)
Frame = -3
Query: 372 TTTPATNTLLSNRLQVASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTV 193
T LLS+ A+G + LG G+SLG AF T+ A D++
Sbjct: 379 TAVTMAPVLLSHLCSRATGITSPLAVLLGVLAGASLGAVAFFTTSPDAPPADHLAAWLAA 438
Query: 192 SKPSRLVWPRGPGSAVHTSQLAIL 121
+ W AV T LA+L
Sbjct: 439 GFVMSVAW----AYAVATELLALL 458
>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
Length = 261
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 306 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 148
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 88 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTTNGARIKTWQGGKGSA 142
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 306 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 148
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 241 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSA 295
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 369 TTPATNTLLSNRLQVASGFQLVDTMALGFAVGSSLGHWAFT 247
T A N L+S+ G QLVD A S W+FT
Sbjct: 302 TLEAINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFT 342
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 129 PVDSYAPRSQAHEARQGEKAWIPCQARLCYLQNPRAP 239
P+D R+ H A +G W P + + Q PR P
Sbjct: 108 PIDCRHGRALFHSAGEGLAVWDPMAGDVRWQQEPRIP 144
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 130 QLTRMHRAPRPTRPD 174
QLTR+H P P RPD
Sbjct: 73 QLTRLHPPPEPPRPD 87
>10_02_0143 +
5795028-5795108,5795197-5795403,5795878-5795976,
5796136-5796224,5797876-5797992,5798262-5798367,
5798522-5798606,5798699-5798808,5799335-5799465,
5799686-5799782,5800310-5800603
Length = 471
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +3
Query: 6 RLKGLSQTRQDGRVQIYTGVV*EKVERCYAISLAYKSVAISPVDSYAPRSQAHEARQGEK 185
+LK L +T G+V K+ +LAY + P DS AP A K
Sbjct: 11 QLKALEETLSASASPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPACSLLRAAPNPK 70
Query: 186 A 188
A
Sbjct: 71 A 71
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 196 RAKQGYVIFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRN 327
R+ GYV+ Y KPK G+ QLK RN
Sbjct: 249 RSGTGYVVLPCPSRRGGRKRPVHKGIVYSKPKHQGITQLKFQRN 292
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 26.2 bits (55), Expect = 8.6
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 81 ERCYAISLAYKSVAISPVDSYAPRSQAHEARQGEKAWIPC---QARLCYLQNP 230
ER ISL Y S IS AP + + RQG +P Q R+ +L P
Sbjct: 1147 ERTLGISLVYISSMISEYLRTAPGIKGNLKRQGVVFTVPSHKKQTRMVHLSTP 1199
>08_01_0413 - 3679887-3681254
Length = 455
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 146 TALPGPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQCPRELPTANPRA 295
++ P PRG+ RR+ PS + A Q P P AN A
Sbjct: 355 SSAPRPRGRGRRQARQDAPSAPATQQQVVNADAGSGNQAPLPPPDANGAA 404
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 158 GPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQC 262
GP +T +GL P+ +++ ++ A +NA C
Sbjct: 120 GPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVC 154
>01_03_0260 -
14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 216 NITLLGTVSKPSRLVW 169
N+TL T S PSRL+W
Sbjct: 265 NVTLYATASWPSRLMW 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,976,320
Number of Sequences: 37544
Number of extensions: 214147
Number of successful extensions: 648
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -