Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J06
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   1.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.0  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    25   3.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   3.5  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   6.1  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    24   8.0  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    24   8.0  

>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 90  ITSNPTSQDLNFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTTETQ 254
           IT   TS+D N    + +FC+ F     A+P  +  + +V  P    +T  +++Q
Sbjct: 345 ITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNK-KNTSVSQSQ 398


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 350 SFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLCFSGFCVSYRSRLSNQFLF 195
           SF + FF   +   +FS +  + FLF F   +  F  F  S    LS   LF
Sbjct: 132 SFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 89  HNFKSDITGPKFHDEGLIILHGLCGCDYCE 178
           +N +  + G     E  + L  L GCDYCE
Sbjct: 208 YNIEKALNGLDMSVEQFVDLCILLGCDYCE 237


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 305 FSFWSRIGFLFLFRNGMLCFSGFCVSYRSR 216
           FS W  + FL+L     L F G  + +RSR
Sbjct: 433 FSSWLLLIFLYLLFTVPLSFVGSLIGFRSR 462


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 PKFHDEGLIILHGLCGCDYCEA 181
           P  + +GL ILH LC  DY ++
Sbjct: 199 PSEYSDGLPILHMLCFKDYTQS 220


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 63  CVSVTVNFFITSNPTSQDLNFTMKVLL 143
           C++++V   +++ PTS  L FT K L+
Sbjct: 109 CIALSVAELVSAYPTSGGLYFTCKDLV 135


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 341 WCFFTFGLRYFFFSFWSRIGFLFLFRNGML 252
           W    FG+R      ++ I F   F+NGML
Sbjct: 624 WALNDFGIRVIIAPSFADIFFNNCFKNGML 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,114,604
Number of Sequences: 5004
Number of extensions: 18346
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)