Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J04
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549...    27   4.4  

>06_03_1359 +
           29554078-29554375,29554470-29554655,29554768-29554923,
           29555557-29555694,29555789-29555909,29556339-29556345
          Length = 301

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +2

Query: 29  PRAALIRHEAKKQPEKSGSAPSKPAEKKNYNC*NXXXXXXGCVQLCAPK 175
           P +   RH  +    + GS  S  ++K +  C N       C + CA K
Sbjct: 146 PMSLFSRHSRRSSSSEDGSVRSGSSKKVDPKCPNAGNPFHECTEHCAAK 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,546,221
Number of Sequences: 37544
Number of extensions: 96615
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)