Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J04
         (412 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L42542-1|AAB00103.1|  655|Homo sapiens RLIP76 protein protein.         30   2.6  
BC013126-1|AAH13126.1|  655|Homo sapiens ralA binding protein 1 ...    30   2.6  
AY517554-1|AAT44527.1|  407|Homo sapiens hypothetical rhabdomyos...    30   2.6  
AB209924-1|BAD93161.1|  462|Homo sapiens ralA binding protein 1 ...    30   2.6  
M63928-1|AAA58411.1|  260|Homo sapiens T-cell activation antigen...    29   7.9  
BC012160-1|AAH12160.1|  260|Homo sapiens CD27 molecule protein.        29   7.9  
AY504961-1|AAR84239.1|  260|Homo sapiens tumor necrosis factor r...    29   7.9  

>L42542-1|AAB00103.1|  655|Homo sapiens RLIP76 protein protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   WRRSRLVDPRAALIRHEAKKQPEKSGSAPSKPAEKKN 115
           WR   +  PR  ++  +A K+  K+G  P+KP+  ++
Sbjct: 613 WRGGAVQPPRDGVLEPKAAKEQPKAGKEPAKPSPSRD 649


>BC013126-1|AAH13126.1|  655|Homo sapiens ralA binding protein 1
           protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   WRRSRLVDPRAALIRHEAKKQPEKSGSAPSKPAEKKN 115
           WR   +  PR  ++  +A K+  K+G  P+KP+  ++
Sbjct: 613 WRGGAVQPPRDGVLEPKAAKEQPKAGKEPAKPSPSRD 649


>AY517554-1|AAT44527.1|  407|Homo sapiens hypothetical
           rhabdomyosarcoma antigen MU-RMS-40.2A protein.
          Length = 407

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   WRRSRLVDPRAALIRHEAKKQPEKSGSAPSKPAEKKN 115
           WR   +  PR  ++  +A K+  K+G  P+KP+  ++
Sbjct: 365 WRGGAVQPPRDGVLEPKAAKEQPKAGKEPAKPSPSRD 401


>AB209924-1|BAD93161.1|  462|Homo sapiens ralA binding protein 1
           variant protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   WRRSRLVDPRAALIRHEAKKQPEKSGSAPSKPAEKKN 115
           WR   +  PR  ++  +A K+  K+G  P+KP+  ++
Sbjct: 420 WRGGAVQPPRDGVLEPKAAKEQPKAGKEPAKPSPSRD 456


>M63928-1|AAA58411.1|  260|Homo sapiens T-cell activation antigen
           protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  ALIRHEAKKQPEKSGSAPSKPAEKKNYNC 124
           AL  H+ +K     G +P +PAE   Y+C
Sbjct: 208 ALFLHQRRKYRSNKGESPVEPAEPCRYSC 236


>BC012160-1|AAH12160.1|  260|Homo sapiens CD27 molecule protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  ALIRHEAKKQPEKSGSAPSKPAEKKNYNC 124
           AL  H+ +K     G +P +PAE   Y+C
Sbjct: 208 ALFLHQRRKYRSNKGESPVEPAEPCRYSC 236


>AY504961-1|AAR84239.1|  260|Homo sapiens tumor necrosis factor
           receptor superfamily, member 7 protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  ALIRHEAKKQPEKSGSAPSKPAEKKNYNC 124
           AL  H+ +K     G +P +PAE   Y+C
Sbjct: 208 ALFLHQRRKYRSNKGESPVEPAEPCRYSC 236


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,250,662
Number of Sequences: 237096
Number of extensions: 524981
Number of successful extensions: 944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)