Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J04
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical ...    27   4.0  
AL032652-5|CAB63399.1|  579|Caenorhabditis elegans Hypothetical ...    27   4.0  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    27   5.3  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    27   7.0  
CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical ...    27   7.0  

>AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical
           protein Y63D3A.6b protein.
          Length = 752

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   RRSRLVDPRAALIRHEAKKQPEKSGSAPSKPAE 106
           RRSRL+DP+ A +  + KK  E  G    + +E
Sbjct: 472 RRSRLIDPQEAGLADQYKKYAEDGGDDELEASE 504


>AL032652-5|CAB63399.1|  579|Caenorhabditis elegans Hypothetical
           protein Y63D3A.6a protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   RRSRLVDPRAALIRHEAKKQPEKSGSAPSKPAE 106
           RRSRL+DP+ A +  + KK  E  G    + +E
Sbjct: 472 RRSRLIDPQEAGLADQYKKYAEDGGDDELEASE 504


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 161 LCAPKPCISQDPSASS*SCFN*GCTCFGTSC 253
           +C PKPC+S +       CF+     +G SC
Sbjct: 437 ICCPKPCVSLEDIYHEGQCFS--MAYYGDSC 465


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 164 CAPKPCISQDPSASS*SCFN*GCTC--FGTSC*EKGAICA 277
           C+P+PC+     +SS   ++  C    FG  C   G  C+
Sbjct: 103 CSPQPCLQNGVCSSSGGTYSCACATGFFGEQCQYSGDPCS 142


>CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical
           protein C50E10.4 protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  RLVDPRAALIRHEAKKQPEKSGSAPSKPA 103
           +LV+P+   +   A+K P++S +AP  PA
Sbjct: 448 KLVEPKKEPVDEPAEKIPKRSEAAPEVPA 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,851,511
Number of Sequences: 27780
Number of extensions: 76131
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)