Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J03
(297 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 27 0.78
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 1.4
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 25 1.8
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 3.1
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 24 4.2
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 24 5.5
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 24 5.5
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 24 5.5
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 24 5.5
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 23 7.3
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 23 9.6
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 23 9.6
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 23 9.6
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 23 9.6
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 23 9.6
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 26.6 bits (56), Expect = 0.78
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -2
Query: 278 GLSVSFFLVSVDCRLPFGVCKASQALLKEARRPRAGLSPPANGESLSWIPTIRRMKNTL 102
G V +L F V K + R A + PP N E IP ++R+K L
Sbjct: 17 GFCVQIMSAGSQTKLNFSVRKTRSS---SKRSNAAIIEPPKNPEDSQIIPAVKRLKENL 72
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 1.4
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -2
Query: 281 AGLSVSFFLVSVDCRLPFGVCKASQALLKEARRPRAGLSPPANGESLSWIPT---IRRMK 111
+GL+ LV++D PFG + +++ + R L PP N S S P+ +++ K
Sbjct: 359 SGLAGINMLVNID---PFGSFDENAQVMRYSANAREILPPPLNENSGSQSPSHSLLQKSK 415
Query: 110 NT 105
NT
Sbjct: 416 NT 417
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -2
Query: 161 PANGESLS---WIPTIRRMKNTLF 99
P NGE +S W+ +IR++KN F
Sbjct: 17 PHNGELISINGWVRSIRKLKNVCF 40
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 3.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 216 SLTGFVEGSAATPSWAITTG*RRISLLDTYYKKDEKHAFLISFYCIT 76
S+ G EG + SW + + + +L+ KKDEK F S CI+
Sbjct: 266 SVPGKFEGEEES-SWGLGKLKKILKMLEKDSKKDEKTKFEESDICIS 311
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 120 KDEKHAFLISFYCITHVCILQGLKIH 43
KDE H FL +T L+GLKI+
Sbjct: 949 KDEDHKFLEKVKQVTLQQFLEGLKIY 974
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 23.8 bits (49), Expect = 5.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 154 LAGGDSPARGRRASFNKACEALHTPKGRRQSTDTKKNETESPAGSMES 297
LA +P R SFN+ P G+ +++ SP+ SM S
Sbjct: 213 LAAARNPLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPS-SMAS 259
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 23.8 bits (49), Expect = 5.5
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 24 IVANDIYGSLDLVKYKHVLYSKRRLEK 104
IVAN + SL L+ ++LY KRRLEK
Sbjct: 100 IVANLLGCSLALLL--NILYHKRRLEK 124
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 185 AALPSTKPVRLYTRRKAGGNPLI 253
AA P+ KPV K GG P +
Sbjct: 219 AAAPAAKPVSTAAPSKKGGKPTV 241
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 42 YGSLDLVKYKHVLYSKRRLEKRVFHPS 122
YG L +YK +Y +R EK + P+
Sbjct: 51 YGDNLLHEYKSSIYKSQRFEKGIAEPT 77
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 198 EGSAATPSWAITTG*RRISLLDTYYKKDEKH 106
+GS + I G RRIS L K +E+H
Sbjct: 80 QGSVESRELTIANGRRRISALAIALKLNERH 110
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 23.0 bits (47), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 127 VGIQERDSPLAGGDS-----PARGRRASFNKACEALHTPK 231
+GI E++ + G+S P +GR ASF K E P+
Sbjct: 12 IGISEKNLDVGFGESSSVDVPVKGRFASFLKKLELSSGPE 51
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 33 NDIYGSLDLVKYKHVL 80
+DI GSL LVK K++L
Sbjct: 7 SDISGSLTLVKLKNIL 22
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 131 VSRREILR*PVVIAQLGVAALPSTKPV 211
+ + + LR ++I+Q +LP+TKPV
Sbjct: 700 LEKSQFLR-EIIISQSAAHSLPTTKPV 725
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 146 ILR*PVVIAQLGVAALPS 199
IL+ PVV ++LG A LPS
Sbjct: 279 ILKNPVVRSKLGFAPLPS 296
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 124 IVGIQERDSPLAGGDSPARGRRASFNKACEALH 222
IVG+ +D + G D+ A +K C+ LH
Sbjct: 38 IVGVIAKDCIVLGADTRATAGPIIADKNCKKLH 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,791
Number of Sequences: 5004
Number of extensions: 23968
Number of successful extensions: 75
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -