Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J03
(297 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 28 1.1
12_01_0112 - 860330-861946 27 2.0
01_05_0534 + 22999876-23000333,23000835-23000949 27 2.6
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 26 4.6
09_06_0073 + 20687057-20687246,20689004-20689203,20689786-206899... 26 4.6
08_02_1489 + 27490143-27490365,27490731-27490732,27491606-274916... 26 4.6
06_01_0942 - 7242389-7243160,7243293-7243822,7245878-7246095,724... 26 6.0
05_06_0221 + 26507795-26508937 25 8.0
05_03_0092 - 8338095-8338230,8338316-8338668 25 8.0
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 25 8.0
02_05_0429 - 28916583-28916882,28917286-28917408,28917484-289175... 25 8.0
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 124 IVGIQERDSPLAGGDSPARGRRASFNKACEALHTPKGRRQST-DTKKNETESPAGSMES 297
++ + + +P +GG S ARG+R S + + E L P + T T+K + G + S
Sbjct: 654 LMAVTDVPNPSSGGKSKARGKR-SMDASTEKLEDPDRDLEDTMKTRKRKKLDTLGDLSS 711
>12_01_0112 - 860330-861946
Length = 538
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 121 LIVGIQERDSPLAGGDSPARGRRASFNKACEALHTPKGRRQSTDTKKNETESPAGSMES 297
+I ERDS + G + R RRAS + A AL G Q+ +E + + ES
Sbjct: 279 IITAFVERDSAASSGGANGRSRRASLSGA-GALQGGGGAMQTVAKTVDEVAAEIATEES 336
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 242 CRLPFGVCKASQALLKEARRPRA-GLSPPANGESLSWIPTI 123
CR F V ++S+A RRP A LSPP +LS PT+
Sbjct: 30 CRSSFAVIRSSKA-EGAPRRPAAPPLSPPPKTPTLSTPPTL 69
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 100 SNLLLLYNTCLYFTRSKDP*ISFATMRYQP 11
S LLL TCLYF +D FA + + P
Sbjct: 250 SVLLLAEGTCLYFGAGRDAMDYFAAVGFSP 279
>09_06_0073 +
20687057-20687246,20689004-20689203,20689786-20689926,
20689995-20690075,20690564-20690688,20690763-20690807,
20691853-20691877,20692282-20693073
Length = 532
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 149 ESLSWIPTIRRMKNTLF*SPFTV*HMF 69
E++S +P +R M+NT PFT ++F
Sbjct: 162 EAVSVLPQLRLMQNTKIVEPFTAHYVF 188
>08_02_1489 +
27490143-27490365,27490731-27490732,27491606-27491651,
27491892-27492091,27492505-27492645,27492730-27492810,
27493353-27493477,27493552-27493600
Length = 288
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 149 ESLSWIPTIRRMKNTLF*SPFTV*HMF 69
E++S +P +R M+NT PFT ++F
Sbjct: 189 EAVSVLPQLRLMQNTKIVEPFTAHYVF 215
>06_01_0942 -
7242389-7243160,7243293-7243822,7245878-7246095,
7246380-7246425
Length = 521
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 206 ALLKEARRPRAGLSPPANGE-SLSWI 132
A L EARRPRA S + G S+ W+
Sbjct: 389 AALVEARRPRAAASSSSGGRLSIFWL 414
>05_06_0221 + 26507795-26508937
Length = 380
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 69 CILQGLKIHKYHLPLCVTNRASC 1
C+L G H + LP +RA C
Sbjct: 75 CVLSGWDTHPFFLPRAARHRARC 97
>05_03_0092 - 8338095-8338230,8338316-8338668
Length = 162
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 204 FVEGSAATPSWAITTG*RRISLLDTYYKKDEKHAF 100
+ G A P WA+ G + L T+Y K F
Sbjct: 40 YEHGKALLPDWALNKGPWEMRRLHTFYMHASKKGF 74
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 200 LKEARRPRAGLSPPANGESLSWIPTIRR 117
L +R PR +SP ANG+ + P RR
Sbjct: 219 LSYSRSPRRSISPAANGKERNPSPNGRR 246
>02_05_0429 -
28916583-28916882,28917286-28917408,28917484-28917561,
28917889-28917950,28918260-28918347
Length = 216
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 123 KKDEKHAFLISFYC 82
K EKHAFL+ F+C
Sbjct: 33 KLSEKHAFLLLFFC 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,701,211
Number of Sequences: 37544
Number of extensions: 168519
Number of successful extensions: 443
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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