Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J03
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical p...    26   5.6  
AL132876-2|CAB60843.3|  534|Caenorhabditis elegans Hypothetical ...    26   5.6  
Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical p...    25   7.4  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z29443-2|CAA82581.1|  648|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z29443-1|CAA82576.1|  649|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical
           protein F42H10.9 protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -2

Query: 206 ALLKEARRPRAGLSPPANGESLSWIPTIRRMKNT 105
           ALL E R PR    PP NG    + P +RR  NT
Sbjct: 171 ALLGEMR-PRMSAMPP-NGHQQQYQPQLRRKANT 202


>Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical
           protein C30F2.2 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 133 IQERDSPLAGGDSPARGRRASFNKACE 213
           + E  SP+ G  SP RGR  S  +A E
Sbjct: 73  LNEPMSPVPGAKSPVRGRATSQKRATE 99


>U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical
           protein T09B4.1 protein.
          Length = 672

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +1

Query: 100 KSVFFILLIVGIQERDSPLAGGDSPARGRRASFNKACEALHTPKGRRQSTDTKKNETESP 279
           KS FF   ++G +E DS  +  DSP         ++C      + + +  + + ++T+  
Sbjct: 71  KSAFFTNRLIGREESDSSSSREDSPLGSTET--GESCSTTDDEESKEKRIEYRDSQTQRC 128

Query: 280 AG 285
            G
Sbjct: 129 LG 130


>AL132876-2|CAB60843.3|  534|Caenorhabditis elegans Hypothetical
           protein Y105E8A.2 protein.
          Length = 534

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 141 LLDTYYKKDEKHAFLISFYCITHVCILQGLKIHKYHLPLCVTNRAS 4
           LL+T   KD+  ++LI  Y    VC   G  + +YH    +T + S
Sbjct: 98  LLETMLYKDKMCSYLIDVYWTYQVC--HGRYVIQYHEDKMLTGQVS 141


>Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.6 protein.
          Length = 337

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 147 ISLLDTYYKKDEKHAFLISFYCITHVCILQGLKIHKYHLPLCVTN 13
           + L +T + K +  A  I  YC  +  +LQ + IH Y+  L VT+
Sbjct: 77  VDLKETGFTK-QFGAIAIGLYCSCYNIMLQLITIHFYYRYLSVTS 120


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 153 RRISLLDTYYKKDEKHAFLISFY 85
           R    LDTYYK  E+H  L+  Y
Sbjct: 504 RNADRLDTYYKAVEEHKKLVEEY 526


>Z29443-2|CAA82581.1|  648|Caenorhabditis elegans Hypothetical
           protein T07C4.3b protein.
          Length = 648

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 178 RGRRASFNKACEALHTPKGRRQSTDTKK 261
           RGR A  NK+  ++ + K R QST + K
Sbjct: 11  RGRHAKRNKSTASVGSKKNRTQSTASGK 38


>Z29443-1|CAA82576.1|  649|Caenorhabditis elegans Hypothetical
           protein T07C4.3a protein.
          Length = 649

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 178 RGRRASFNKACEALHTPKGRRQSTDTKK 261
           RGR A  NK+  ++ + K R QST + K
Sbjct: 11  RGRHAKRNKSTASVGSKKNRTQSTASGK 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,183,199
Number of Sequences: 27780
Number of extensions: 136106
Number of successful extensions: 298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)