Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J01
(342 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 139 1e-34
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 137 4e-34
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.26
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 0.80
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 1.1
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 1.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.1
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 26 1.8
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 3.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 3.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 3.2
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 4.3
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 24 5.6
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 24 5.6
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 24 7.5
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 23 9.8
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 23 9.8
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 23 9.8
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 139 bits (336), Expect = 1e-34
Identities = 69/105 (65%), Positives = 76/105 (72%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMIR 205
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDM 340
+ VRGIS KLQEEERER+D YVPEVS LE+D I VD DTKDM
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDM 105
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 137 bits (332), Expect = 4e-34
Identities = 68/105 (64%), Positives = 75/105 (71%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMIR 205
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDM 340
+ VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDM
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDM 105
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 28.7 bits (61), Expect = 0.26
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 241 LNRDSSHLGVYETYHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 107
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTISK--QRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 0.80
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 226 SHLGVYETYHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 77
SH+ + +T + G P V KR+ D N L + IE +KS P VV +
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.6 bits (56), Expect = 1.1
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 170 KIAGFTTHLMIRLIHSQVRGISIKLQEEERERRDNYV 280
KIA FT +M+ L + G+S+KLQE+E +R + V
Sbjct: 352 KIASFTD-IMVCLC---IGGLSLKLQEQELRKRPDIV 384
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 26.6 bits (56), Expect = 1.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 129 VRKLLSFLLSLFATKLLGSPPI**YVSYTPRCEESLLSFKK 251
VR LL FL+ + ++G+P +VSY P + + F+K
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRK 199
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 215 SQVRGISIKLQEEERERRDNYVPEV 289
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 1.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 202 YHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFFDYN 68
Y Q G PS L+ +LT+ FIG+ +V+ ++YN
Sbjct: 18 YFQDGASPSYLGVTHLNDYLMFYLTFIFIGVIYAICKAVIEYNYN 62
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 134 EIAIIPTKPLRNKIAGFTTHLMIRLIHSQVR 226
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 3.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 305 PVLEQILLGHNCHAF 261
P+LEQ+L G+NC F
Sbjct: 142 PMLEQVLNGYNCTIF 156
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 215 SQVRGISIKLQEEERERRDNYVPEVS 292
S+ R S KL EEER+RR +V +++
Sbjct: 223 SRPRERSSKLSEEERDRRTVFVSQLA 248
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 90 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 179
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 185 TTHLMIRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKD 337
+ HLM ++ + + QEE R+RR ++ E E++ +D D +
Sbjct: 99 SAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDE 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 5.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 233 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTK 334
SI Q ++ D V + S EQD EVD+D K
Sbjct: 18 SIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYK 51
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.8 bits (49), Expect = 7.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = -3
Query: 280 DIIVTPFTLLFLKLNRDSSHLGVYETYHQMGGEPSNFVAKRLSRN---DSNF-LTYPFIG 113
DI+ T T+ L+L + ++ Y GEP N VA + R D N L P G
Sbjct: 580 DIVNTSDTMEVLELQKKPPYIVQNTMYKLFFGEPLNPVAVKAQRKVMPDENLDLNCPING 639
Query: 112 I 110
+
Sbjct: 640 V 640
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 271 VTPFTLLFLKLNRDSSHLGVYETYHQMGGEP 179
VTP TL FLK N + S L + + EP
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 193 MGGEPSNFVAKRLSRNDSN 137
MGG PS F LSRN N
Sbjct: 459 MGGNPSLFNGSVLSRNSVN 477
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 136 NCYHSY*ASSQQNCWVHHPFDDTSH 210
+ YH+ A + W H F TSH
Sbjct: 232 HAYHASMAPKRSGSWRHTNFHSTSH 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,757
Number of Sequences: 5004
Number of extensions: 26204
Number of successful extensions: 95
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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