Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_J01
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 128 1e-30
03_01_0066 - 537729-538163 128 1e-30
01_01_0189 - 1640581-1640832,1640936-1641132,1641243-1641608,164... 27 2.9
12_02_0534 - 20103908-20105897,20106314-20107116 27 5.1
06_01_0829 - 6254769-6254852,6254940-6255024,6255158-6255245,625... 26 6.7
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 26 6.7
07_01_0358 - 2631214-2632992 26 8.9
06_03_1207 + 28418473-28421073 26 8.9
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 26 8.9
03_02_0121 + 5737584-5737670,5738181-5738235,5739366-5739745 26 8.9
02_05_0243 - 27124559-27124864,27126922-27126990,27127741-271279... 26 8.9
02_04_0512 + 23565210-23566058,23566824-23568224 26 8.9
>10_07_0174 + 13815478-13815903
Length = 141
Score = 128 bits (309), Expect = 1e-30
Identities = 61/105 (58%), Positives = 77/105 (73%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMIR 205
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLM R
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDM 340
+ VRGIS+KLQEEERERR ++VPE SALE + I VD +T +M
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEM 105
>03_01_0066 - 537729-538163
Length = 144
Score = 128 bits (308), Expect = 1e-30
Identities = 61/105 (58%), Positives = 77/105 (73%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMIR 205
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLM R
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDM 340
+ VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DM
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDM 105
>01_01_0189 -
1640581-1640832,1640936-1641132,1641243-1641608,
1641826-1642224,1642313-1642719,1642814-1642941
Length = 582
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1 ARGLHRRNHGSC 36
A GLHRR HGSC
Sbjct: 37 AAGLHRRGHGSC 48
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 218 QVRGISIKLQEEER---ERRDNYVPEVSALEQDIIEVDSDTKDM 340
Q+ G+ + ++ + ERRD Y+ + +A +++VDS + M
Sbjct: 111 QIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAM 154
>06_01_0829 -
6254769-6254852,6254940-6255024,6255158-6255245,
6255344-6255407,6255496-6255576,6256709-6256781,
6256871-6257385,6258168-6258284
Length = 368
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 242 LQEEERERRDNYVPEVSALEQDIIEVDSD 328
+ E E +R +++PE + ++++I E D D
Sbjct: 26 VSERESQRHPSHLPEATEVQENIYEDDDD 54
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 26.2 bits (55), Expect = 6.7
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -3
Query: 244 KLNRDSSHLGVYETYH----QMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 77
+LNRD + L V++ Q +P+N K SNF + +G+ +P V
Sbjct: 127 RLNRDVAKLEVFKKTLMQSLQEDEDPANTTPKARVSETSNFSSATSVGVPRPPRPHVFLP 186
Query: 76 DYN 68
YN
Sbjct: 187 SYN 189
>07_01_0358 - 2631214-2632992
Length = 592
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 254 ERERRDNYVPEVSALEQDIIEVDSDT 331
ER RR+ Y+P S + DI E + +T
Sbjct: 494 ERLRREGYIPRTSNVLADIEEEEKET 519
>06_03_1207 + 28418473-28421073
Length = 866
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 237 IEIPRTWECMRRIIKWVVNPAILLRRGLV 151
IE+ TW+ + R++K +NP + L+
Sbjct: 679 IELDITWQLLERMVKHGLNPTVTTYSSLI 707
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 191 HLMIRLIHSQVRGISIKLQEEERERRDNYVPE 286
HL+ ++HS V +S++L E ++R+ N+ E
Sbjct: 564 HLVDVILHSSVGDLSMELVNEIKDRQRNFDTE 595
>03_02_0121 + 5737584-5737670,5738181-5738235,5739366-5739745
Length = 173
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 204 VSYTPRCEESLLSFKKRSVKGVTIMSQKYLL*NRISLKSIRTPRIC 341
+ Y PR + +L K +++G+ ++ ISL+S R+ +IC
Sbjct: 102 IRYAPRVKVTLSRGKLSAIEGMKTKVVVWVKVASISLESFRSDKIC 147
>02_05_0243 -
27124559-27124864,27126922-27126990,27127741-27127926,
27128572-27129093
Length = 360
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = -3
Query: 214 VYETYHQMGG-EPSNFVAKRLSRNDSNFLTY----PFIGIEVKSKPSVVFFD 74
V+ETYH GG + + K +S N + L + F + V S P +F+D
Sbjct: 177 VFETYHIQGGTDRTGVPTKMMSVNATVRLRFRNRGTFFSLHVTSTPFHLFYD 228
>02_04_0512 + 23565210-23566058,23566824-23568224
Length = 749
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 182 FTTHLMIRLIHSQVRGISIKLQEEERERRDN 274
F +M R +H+ RG S+++ E ERR +
Sbjct: 198 FRLEMMSRAVHAAARGGSVEMLRELIERRSD 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,678,603
Number of Sequences: 37544
Number of extensions: 154067
Number of successful extensions: 364
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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