Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_J01
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   128   8e-31
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    29   0.66 
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    29   1.2  
U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine rece...    28   1.5  
Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical pr...    26   6.1  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    26   6.1  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    26   8.1  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  128 bits (310), Expect = 8e-31
 Identities = 63/108 (58%), Positives = 76/108 (70%), Gaps = 3/108 (2%)
 Frame = +2

Query: 26  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMIR 205
           M RVRT             YYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLM R
Sbjct: 1   MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60

Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTKDM 340
           +    VRGISIKLQEEERERRDNY+PE+S ++      I+VD+DT DM
Sbjct: 61  IERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDM 108


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +2

Query: 194 LMIRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 304
           ++ R ++SQ+  +SI L+ E +ER+D+Y   + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 175 NFVAKRLSRNDSNFLTYPFIGI 110
           N+  + +S N SN+LTYPF G+
Sbjct: 8   NYCDRGISPNASNYLTYPFDGL 29


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 175 NFVAKRLSRNDSNFLTYPFIGI 110
           N+  + +S N SN+LTYPF G+
Sbjct: 28  NYCDRGISPNASNYLTYPFDGL 49


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 179 GFTTHLMIRLIHSQVRGISIKLQEEERE 262
           GFT  L  RLI +++R +   ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498


>U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine
           receptor, class h protein28 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 271 VTPFTLLFLKLNRDSSHLGVYETYHQMGGEPSNFVAKRLSRNDSNFLTYPFI 116
           V P T  + KL+    HL VY TY       SNF     +++++ F  Y  +
Sbjct: 134 VLPITFQYYKLSIRFGHLFVYGTYISSVCSLSNFALLYENQDNAKFFWYKLL 185


>Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical
           protein W04G5.4 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 277 IIVTPFTLLFLKLNRDSSHLGVYET 203
           II TP T    ++ RDS+  G Y T
Sbjct: 282 IIFTPLTNAIFRIRRDSNEAGPYST 306


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 213 TPRCEESLLSFKKRSVKGVTIMSQKYLL*N 302
           T +CEE L+ F ++ +K    +++KY L N
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLEN 264


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 172 FVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 77
           FV   +SR  SN L YP +   V S+P   +F
Sbjct: 445 FVMDDVSRRTSNLLRYPDLHWRVFSRPGKRYF 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,590,061
Number of Sequences: 27780
Number of extensions: 140507
Number of successful extensions: 404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)