Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I23
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    84   8e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    84   8e-18
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    26   1.8  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   2.4  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   3.1  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   4.1  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   4.1  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   5.5  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   7.2  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    24   7.2  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 83.8 bits (198), Expect = 8e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +3

Query: 99  KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLK 278
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 279 RRLGTHIRAKRKREELSNVLTQMR 350
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 83.8 bits (198), Expect = 8e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +3

Query: 99  KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLK 278
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 279 RRLGTHIRAKRKREELSNVLTQMR 350
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 129 RPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAME 233
           RPA L+ ++T  SKFV  +    V R  Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 183 LVREVVGRAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 314
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 244 TLSNSIALFSYCARPTTSRTKSRTNLEC 161
           T+++S  LF+  A   T+ TKS  N+EC
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVEC 877


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +3

Query: 72  KTTKISAGKKGITDKAIKIR--PARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKV 245
           K   ++  K+ + +  ++++  P  L+  Q   S+  R+L ++   + Q EK+  EL++ 
Sbjct: 424 KQNVVNEAKRYLQETILRLQAIPYHLQVGQAWTSESERELEKK---KEQVEKKQEELMQT 480

Query: 246 SKDKRALKFLKRRLGTHIRAKRKREELSNVLTQM 347
                   FL   +    +AKRK  E+  +L+ +
Sbjct: 481 RIVLEEQVFLVENMIEDAKAKRKFSEVETLLSSL 514


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/65 (24%), Positives = 39/65 (60%)
 Frame = +3

Query: 153 QTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 332
           Q  +++ + D+ +E   + + E +  +LLK ++   + K  K+RL  +I  K K+EE+++
Sbjct: 50  QDSNAEILIDVPKEERQKRKQELKD-QLLKENEGSISSK-KKKRLDKYIENKLKKEEVAS 107

Query: 333 VLTQM 347
           ++ ++
Sbjct: 108 LIAKL 112


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 47  RNWSAKRPQNDKDIRWQKGY 106
           +NW    PQ   +  W+KGY
Sbjct: 219 KNWEYPSPQQMYNAMWRKGY 238


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +3

Query: 66  GHKTTKISAGKKGITDKAIKIRPARLKGI------QTKHSKFV-RDLVREVVGRAQYEKR 224
           G+   K S      TDK   I+P  LKG+       TK ++ + RDL+R V+G    E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788

Query: 225 AME 233
            ++
Sbjct: 789 EIK 791


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 351 SSSVLVRC*ALHASSSRGCVCRGDAS 274
           S  V++   + H S++RGC+   DAS
Sbjct: 406 SDKVIIGYDSFHTSNNRGCLALFDAS 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,637
Number of Sequences: 5004
Number of extensions: 31108
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)