Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I23
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 102 1e-22
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 101 2e-22
07_03_0078 - 13147741-13148913 32 0.19
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 0.99
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 1.3
09_01_0024 + 438288-438542,439020-439069,440096-440351 29 1.7
11_02_0038 - 7631462-7634428,7635975-7636250 27 4.0
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 27 4.0
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 27 4.0
07_03_0079 + 13169773-13170861 27 5.3
05_01_0113 + 760584-760861,760964-761021,761229-761306 27 7.0
03_06_0682 - 35516081-35518303 27 7.0
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 26 9.2
11_04_0444 + 17816207-17817436 26 9.2
06_03_0334 - 19660526-19661755 26 9.2
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 26 9.2
02_01_0411 - 2998806-3000938 26 9.2
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 102 bits (244), Expect = 1e-22
Identities = 55/106 (51%), Positives = 69/106 (65%)
Frame = +3
Query: 33 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQ 212
P+ + +G+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 213 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 350
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 101 bits (243), Expect = 2e-22
Identities = 55/106 (51%), Positives = 69/106 (65%)
Frame = +3
Query: 33 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQ 212
P+ + +G+ KGH TK + + RP+ KG TK FVR+L+REV G A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 213 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 350
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ VL +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101
>07_03_0078 - 13147741-13148913
Length = 390
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 136 AGLILMALSVIPFLPADIFVVLWPF 62
AGL+ AL VIP LP + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 29.5 bits (63), Expect = 0.99
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 344 DEEGGRTPSPPRHHSH 391
DEE TPSPP HH H
Sbjct: 83 DEEEEATPSPPPHHQH 98
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/71 (22%), Positives = 39/71 (54%)
Frame = +3
Query: 114 KAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLKRRLGT 293
+A + + A L+ + S+ ++LV E +G+ EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697
Query: 294 HIRAKRKREEL 326
R + + ++
Sbjct: 698 EERLQSQESKV 708
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 207 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 332
A++E R E LK ++++ A K LKR+ + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 252 DKRALKFLKRRLGTHIRAKRKREELSNV 335
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 308 LRADVCAE-ATLQELKGALIFRYFEQFHCPLLILC 207
L+ + CA ATL L+ R+ E F CP L LC
Sbjct: 1418 LKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLC 1452
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 339 LVRC*ALHASSSR--GCVCRGDAS 274
L RC LH+ SS GC+C GD++
Sbjct: 527 LKRCVGLHSGSSVVVGCICNGDSN 550
>07_03_0079 + 13169773-13170861
Length = 362
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 136 AGLILMALSVIPFLPADIFVVLWP 65
AGL+ AL IP LP+ + +V WP
Sbjct: 44 AGLLYFALVGIPALPSILRLVAWP 67
>05_01_0113 + 760584-760861,760964-761021,761229-761306
Length = 137
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 60 RKGHKTTKISAGKKGITDKAIKIRPARL 143
RKGHK +ISA K+ T + +K P L
Sbjct: 81 RKGHKCDRISAEKRANTVELMKKMPQML 108
>03_06_0682 - 35516081-35518303
Length = 740
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3
Query: 132 PARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 299
P + ++ + F+++++ ++ EKR ELL+ ++K LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383
Query: 300 RAKRKREELSNVL 338
R K ++E +L
Sbjct: 384 RTKTTKKEWEAIL 396
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 252 DKRALKFLKRRLGTHIRAKRKREELSNVL 338
DK L K +G + +R+RE+LSN+L
Sbjct: 498 DKVLLNVRKLYIGLSMSKRRQREQLSNIL 526
>11_04_0444 + 17816207-17817436
Length = 409
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 278 ASPRHTHPREEEA*RAQQRTNTDEEGGR 361
ASP HT E+E ++ +++ EEG R
Sbjct: 130 ASPCHTRHNEKEVVEVEEASDSSEEGRR 157
>06_03_0334 - 19660526-19661755
Length = 409
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 278 ASPRHTHPREEEA*RAQQRTNTDEEGGR 361
ASP HT E+E ++ +++ EEG R
Sbjct: 130 ASPCHTRHNEKEVVEVEEASDSSEEGRR 157
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 26.2 bits (55), Expect = 9.2
Identities = 21/81 (25%), Positives = 47/81 (58%)
Frame = +3
Query: 111 DKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALKFLKRRLG 290
D+ I+ + + + ++ + S+ RDL RE +A + ++ L KV+ + A + +KR+
Sbjct: 316 DEIIQSQKSNICELEAQLSE-ERDLRREERDKAAEDLKSA-LHKVNAE--AQEEIKRQAE 371
Query: 291 THIRAKRKREELSNVLTQMRK 353
H+R +R+++E+ + L + K
Sbjct: 372 AHLRQQREQKEVISKLQESEK 392
>02_01_0411 - 2998806-3000938
Length = 710
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 221 LLILCAPNNFTNQIA--DKLRVFGLNAL*PSWPNFNGFVCNTLFASGYL 81
++I + N FT ++A + + L AL SW NFNG + ++++ L
Sbjct: 318 VIINLSTNKFTGELAKVNFSNLPNLKALDFSWNNFNGTIPESIYSCSNL 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,294,623
Number of Sequences: 37544
Number of extensions: 220546
Number of successful extensions: 659
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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