Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I23
(391 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 108 1e-24
Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical p... 33 0.071
AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical ... 33 0.071
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 31 0.38
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 31 0.38
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 31 0.38
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 31 0.38
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 31 0.38
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 30 0.67
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 30 0.67
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr... 29 0.88
Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical pr... 29 0.88
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein. 29 0.88
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein. 29 0.88
Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical pr... 29 1.2
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 29 1.5
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 28 2.0
AF016449-14|AAG23991.1| 517|Caenorhabditis elegans Hypothetical... 27 3.6
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 27 4.7
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 27 4.7
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 27 6.2
Z81117-12|CAB03320.2| 345|Caenorhabditis elegans Hypothetical p... 27 6.2
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 27 6.2
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 26 8.2
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 26 8.2
AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 26 8.2
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 108 bits (260), Expect = 1e-24
Identities = 55/103 (53%), Positives = 72/103 (69%)
Frame = +3
Query: 45 IAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKR 224
+A+GL KGH T++ +K R R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58
Query: 225 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMRK 353
+E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+ RK
Sbjct: 59 VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 33.1 bits (72), Expect = 0.071
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -3
Query: 365 VCGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 246
VCG + + Y+ LFTLPL A C + +QE + A+IFR
Sbjct: 25 VCGWIITIISYLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63
>AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 33.1 bits (72), Expect = 0.071
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -3
Query: 365 VCGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 246
VCG + + Y+ LFTLPL A C + +QE + A+IFR
Sbjct: 25 VCGWIITIISYLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 365 VCGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 246
VCG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 41 VCGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 79
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 365 VCGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 246
VCG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 116 VCGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 154
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 365 VCGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 246
VCG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 116 VCGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 154
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 365 VCGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 246
VCG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 116 VCGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 154
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 365 VCGRLPHLC*YVAELFTLPLRADVCAEATLQELKGALIFR 246
VCG + + Y+ FTLP+ A +C + +QE + A+IFR
Sbjct: 116 VCGWILTILSYLLIFFTLPISACMCIK-VVQEYERAVIFR 154
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 29.9 bits (64), Expect = 0.67
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 60 RKGHKTTKISAGKKGITDKAIKIRPARLKGI----QTKHSKFVRDLVREVVGRAQYEKRA 227
R K + A K+ + ++ + +GI Q +HS+ VR++ + + EK+
Sbjct: 701 RPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYANATRKEKKK 760
Query: 228 MELLKVSKDKR 260
+EL++++K K+
Sbjct: 761 VELVRMTKGKK 771
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 29.9 bits (64), Expect = 0.67
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 60 RKGHKTTKISAGKKGITDKAIKIRPARLKGI----QTKHSKFVRDLVREVVGRAQYEKRA 227
R K + A K+ + ++ + +GI Q +HS+ VR++ + + EK+
Sbjct: 701 RPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYANATRKEKKK 760
Query: 228 MELLKVSKDKR 260
+EL++++K K+
Sbjct: 761 VELVRMTKGKK 771
>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
protein C34B4.1b protein.
Length = 1099
Score = 29.5 bits (63), Expect = 0.88
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 151 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 47
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724
>Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical
protein C34B4.1a protein.
Length = 995
Score = 29.5 bits (63), Expect = 0.88
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 151 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 47
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 587 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 620
>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
Length = 1045
Score = 29.5 bits (63), Expect = 0.88
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 151 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 47
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 637 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 670
>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
Length = 1099
Score = 29.5 bits (63), Expect = 0.88
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 151 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 47
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724
>Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical
protein T28D6.7 protein.
Length = 322
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 4 RGSVNPKSWLPDLKSQLVCEKATKRQRYPLAKRVLQTKPLKLGQL 138
R V +SWL K +L+C + + YP AK ++ L G L
Sbjct: 165 RDFVMQRSWLETDKDRLICSHSVCHEDYPPAKGCIRATVLISGYL 209
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 126 IRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKR 260
++ ++ + T + L+REV G Y++R E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 28.3 bits (60), Expect = 2.0
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +3
Query: 42 EIAIGLRKGHKTTKISAGKKGITDKAIKIRP---ARLKGIQTKHSKFVRDLVREVVGRAQ 212
E + L K + I KK +K R AR+K + K K + + R+ +
Sbjct: 501 EETLKLEKRIEEVSIEESKKKQEKLELKQREEEEARIKEEEEKQRKILEEEARKKQEEEE 560
Query: 213 YEKRAMELLKVSKDKRALKFL--KRRLGTHIRAKRKREE 323
+A E LK+ ++++ K L +R+ + KRK EE
Sbjct: 561 ARLKAEEELKIYEEEKRKKELEEERKKKEELEIKRKAEE 599
>AF016449-14|AAG23991.1| 517|Caenorhabditis elegans Hypothetical
protein C50H11.1 protein.
Length = 517
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 305 RADVCAEATLQELKGALIFRYFEQFHCPLLILCAPNNFTNQIADKLRVF 159
R + AE + LK A +F F+ LL A NNF + +K+R+F
Sbjct: 250 RPNFDAEDCSKHLKNATVFMGVPTFYSRLL---ATNNFNKESFEKIRLF 295
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +3
Query: 15 QSEIMAPRFEIAIGLRK----GHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRD 182
++E++A R ++ LR+ H+ +++ K + K +I T+ KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185
Query: 183 LVREVVGRAQYE 218
+ RE G +YE
Sbjct: 1186 IEREYKGIPEYE 1197
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +3
Query: 15 QSEIMAPRFEIAIGLRK----GHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRD 182
++E++A R ++ LR+ H+ +++ K + K +I T+ KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185
Query: 183 LVREVVGRAQYE 218
+ RE G +YE
Sbjct: 1186 IEREYKGIPEYE 1197
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 252 DKRALKFLKRRLGTHIRAKRKREELSNVLTQMRK 353
+KR + KR+L HI K K E NV T+M K
Sbjct: 249 EKRQKRKKKRQLSVHIETKAKEPE--NVPTEMTK 280
>Z81117-12|CAB03320.2| 345|Caenorhabditis elegans Hypothetical
protein T06E6.5 protein.
Length = 345
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 173 KLRVFGLNAL*PSWPNFNGFVCNTLFASGYLCRFVAFSQ 57
KL V GL +L W + + N F + +C FV FS+
Sbjct: 198 KLDVTGLTSL-TQWRKAHTVIMNDFFITADICDFVNFSE 235
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 174 VRDLVREVVGRAQYEKRAMELLKV 245
+RD + EV+G Q++K +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 252 DKRALKFLKRRLGTHIRAKRKREELSNVLTQMRK 353
+KR + KR+L HI K K E NV T+M K
Sbjct: 249 EKRQKRKKKRQLSVHIETKAKEPE--NVPTEMTK 280
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 16 NPKSWLPDLKSQLVCEKATKRQRY-PLAKRVLQTKPLKLGQLG 141
N K + DL+ +L EKA K+ L + + + +PLK G+ G
Sbjct: 813 NDKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKG 855
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 16 NPKSWLPDLKSQLVCEKATKRQRY-PLAKRVLQTKPLKLGQLG 141
N K + DL+ +L EKA K+ L + + + +PLK G+ G
Sbjct: 813 NDKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKG 855
>AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical
protein H23N18.4 protein.
Length = 475
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 183 LVREVVGRAQYEKRAMELLKV 245
+V+++V +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,240,607
Number of Sequences: 27780
Number of extensions: 178314
Number of successful extensions: 595
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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