Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I21
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 77 6e-15
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 30 0.68
12_02_0630 + 21367620-21367695,21367890-21367976,21368287-213683... 28 2.1
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 28 2.1
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317... 28 2.1
04_03_0964 - 21290107-21290667,21290780-21291130,21291230-212914... 28 2.1
10_01_0108 + 1337009-1338190 28 2.7
04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706 27 3.6
10_08_0131 - 15078894-15079617,15079898-15080016 27 4.8
07_03_0808 - 21668100-21669092 27 4.8
08_01_0291 - 2337777-2338343 27 6.3
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 27 6.3
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 76.6 bits (180), Expect = 6e-15
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Frame = +2
Query: 71 MIIYKDVITGDEMFSDTYRVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 241
M++Y+D++TGDE+ SD++ + I+ +++EV GK V++ D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 242 TDSNVETGVEIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKL 373
D V+IV RL E F DKK + ++K Y+K L AKL
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKL 102
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 29.9 bits (64), Expect = 0.68
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 222 AEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 91
+EG+N S + CV++ LP S + T+ ENIS PV+
Sbjct: 662 SEGINFSDGMGRCVVMVGLPYPSPSDVELTETIKYIENISKPVL 705
>12_02_0630 +
21367620-21367695,21367890-21367976,21368287-21368333,
21368413-21368470,21369056-21369166,21369353-21369478,
21370123-21370182,21370966-21371186,21371274-21371460,
21371939-21372063
Length = 365
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +2
Query: 65 IKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEAD 235
+K+++ + T D++ D +++ +++ ++ +DD+HI G P A+ D
Sbjct: 14 LKLVMMESHATPDDLTGDKGAAQILHRQLFDAHEPNLL-DEDDMHIFGSKPMADPLD 69
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 62 SIKMIIYKDVITGDEMFSDTYRVKLIDE 145
+ K+I + + DEMFSD R KL+D+
Sbjct: 318 AFKIICSRKIDKSDEMFSDDVRSKLLDD 345
>11_06_0024 -
19331250-19331380,19331412-19331484,19331571-19331768,
19333317-19333484,19334187-19334263,19335321-19335423
Length = 249
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 62 SIKMIIYKDVITGDEMFSDTYRVKLIDE 145
+ K+I + + DEMFSD R KL+D+
Sbjct: 168 AFKIICSRKIDKSDEMFSDDVRSKLLDD 195
>04_03_0964 -
21290107-21290667,21290780-21291130,21291230-21291411,
21291505-21291631,21291956-21292168,21292627-21292755,
21292891-21293616
Length = 762
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 137 IDEVIYEVTGKTVIRTQDDIHIDGFNP 217
+ E ++EVTGK + DD + DG +P
Sbjct: 639 LSETVFEVTGKDKSMSDDDDNTDGADP 665
>10_01_0108 + 1337009-1338190
Length = 393
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 65 IKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDI 196
I + + + E ++D Y+ +L+D I E+ K V++ +I
Sbjct: 131 IGLTFIRSIHLSSEAYNDAYKFRLLDSCIDEIGEKNVVQVVSNI 174
>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
Length = 187
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 147 LFMKSPARP*SEHKTISTLMDLTPRPRRLTKGRIPTWRL 263
L + +PA P + H+ L+ +PR L R P WRL
Sbjct: 6 LLLANPAAPTARHQ--HRLLQQRRQPRLLASSRPPRWRL 42
>10_08_0131 - 15078894-15079617,15079898-15080016
Length = 280
Score = 27.1 bits (57), Expect = 4.8
Identities = 22/96 (22%), Positives = 42/96 (43%)
Frame = +2
Query: 8 VLGARSRSFGFIILNRLQSIKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQ 187
V+ ++++ + +N + K I +D + E +D Y + VI +V+
Sbjct: 25 VMTIAAQAYHVLKINGARGFKNFIRRDELERSEYLNDDY-FAIAAHVIIPKEKPSVVVPP 83
Query: 188 DDIHIDGFNPSAEEADEGTDSNVETGVEIVLNHRLV 295
++H+ + + EGTD G E+ HRLV
Sbjct: 84 SNMHLHYGDLLVSK--EGTDVKFLVGGEMFAAHRLV 117
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 323 ISYRQMHTFRLACDSGLSLHQ--SPRWNPSLRQPPRPR 216
+S R H ++ SGL LH +PR P R+P RPR
Sbjct: 108 LSRRWRHVWKWV--SGLFLHHYPAPRLQPRARRPRRPR 143
>08_01_0291 - 2337777-2338343
Length = 188
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 184 CSDHGLAGDFINNFVDQLN 128
CS GLAGD++N +D N
Sbjct: 134 CSFDGLAGDYLNGLIDVEN 152
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 291 SL*FRTISTPVSTLESVPSSASSAEGLNPSM 199
SL FR + P+S L S+ +S + GLN S+
Sbjct: 317 SLPFRIVQAPLSDLCSLQNSVDVSSGLNDSI 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,489
Number of Sequences: 37544
Number of extensions: 203131
Number of successful extensions: 577
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -