Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I19
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0774 + 20478203-20479393                                         29   2.2  
12_01_0450 - 3552701-3552865,3552971-3553195,3553306-3553473,355...    27   5.0  
08_01_0382 - 3402015-3403604                                           27   5.0  
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220...    27   8.7  
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606...    27   8.7  
06_02_0053 - 10974209-10974229,10974562-10974621,10974708-109747...    27   8.7  
06_02_0052 - 10964659-10964919,10964938-10965006,10965069-109651...    27   8.7  

>10_08_0774 + 20478203-20479393
          Length = 396

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 259 IQTEC*LHWRRNAR*DCPQNATN*IDSKKPARLGSAVCNS 140
           + T+C  H RR  + D P   TN   + +P   G+AVC S
Sbjct: 75  VWTQCAQHCRRCFKQDLPLFDTNASSTFRPEPCGAAVCES 114


>12_01_0450 -
           3552701-3552865,3552971-3553195,3553306-3553473,
           3554514-3554629,3554735-3554887,3554978-3555121,
           3556667-3557276
          Length = 526

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 157 NRDGQVFSSQFSLSHFVGNLSGRSFASVTST 249
           N DGQ+  S+F+     GN  G +   VTST
Sbjct: 471 NNDGQIDYSEFAAMMRKGNAGGANAGGVTST 501


>08_01_0382 - 3402015-3403604
          Length = 529

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 150 TAEPRRAGFFESIQFVAFCGQSQRA 224
           T  P RAG   SIQ+  + GQS +A
Sbjct: 410 TPFPHRAGILYSIQYTVYWGQSDQA 434


>10_06_0169 +
           11420115-11420163,11420922-11421041,11421938-11422053,
           11422125-11422213,11422413-11422455,11423296-11423440,
           11423581-11423688,11423767-11424086,11424255-11424671,
           11424776-11425470,11425564-11426107,11426338-11426682,
           11426799-11426909
          Length = 1033

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 100 GNSHNNSVQYGNQKNCTRPNRDGQVFSSQFSLSHFVGNLSGR 225
           G  +++  Q   Q+N   P  D  +FSS+ S S  +GN  G+
Sbjct: 189 GTGYHSFTQMQQQQNGIGPVTDASMFSSRVSASS-IGNYQGQ 229


>09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,
            6066333-6066382,6068917-6069172,6069358-6069503
          Length = 1164

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +3

Query: 138  EELHTAEPRRAGFF-----ESIQFVAFCGQSQRAFLRQCN*HS--VCIQRITALVSSF*T 296
            EE++T E    G F     E +Q + FCGQS   +L   +  +   CI+ I  +  SF T
Sbjct: 862  EEINTIEAIFEGLFPPPSLEKLQIINFCGQSLPGWLISSSLETNLPCIEYIHLIGCSFCT 921

Query: 297  KM 302
            ++
Sbjct: 922  QL 923


>06_02_0053 -
           10974209-10974229,10974562-10974621,10974708-10974750,
           10975818-10975903,10976405-10976474,10976604-10977265
          Length = 313

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 206 WAISAGVPSPV*LALSLYTAHHGLGLEFLDED 301
           WA+  G  S +  A++L  A HGL L  +  D
Sbjct: 60  WAVVTGPTSGIGRAMALELARHGLNLVLVGRD 91


>06_02_0052 -
           10964659-10964919,10964938-10965006,10965069-10965138,
           10965861-10966420
          Length = 319

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 206 WAISAGVPSPV*LALSLYTAHHGLGLEFLDED 301
           WA+  G  S +  A++L  A HGL L  +  D
Sbjct: 59  WAVVTGPTSGIGRAMALELARHGLNLVLVGRD 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,482,416
Number of Sequences: 37544
Number of extensions: 190592
Number of successful extensions: 372
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)