Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I19
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 204 KMRQTELTRKNLPVSVRPCAILLVSVLDTV 115
           ++ +T +TR+N P  V P  +L+ S +  +
Sbjct: 126 RLSETSITRRNFPRKVNPALLLIPSAISVI 155


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +1

Query: 157 NRDGQVFSSQFSLSHFVGNLSGRSFASVTSTQSVYXXXXXXXXXXXXXWNDSTLRN 324
           NR G +F     +   VGN+  + F  VT T+ +              W D   RN
Sbjct: 200 NRKGLIFEVNELIDPEVGNIPIKKFREVTLTKVLEFSQEINMKLLKKNWRDEKKRN 255


>Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical
           protein F25H2.6 protein.
          Length = 573

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 KTAWPVAHKESIFLPEFHITTELHQKD 420
           KT WP A +ES+F+       E H++D
Sbjct: 443 KTVWPAAPRESLFVSHIRRVDE-HKRD 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,534,051
Number of Sequences: 27780
Number of extensions: 181747
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)