Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I18
         (215 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY484405-1|AAR86939.1|  857|Drosophila melanogaster reverse tran...    26   6.2  
AY484404-1|AAR86938.1|  857|Drosophila melanogaster reverse tran...    26   6.2  
AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-P...    26   8.2  

>AY484405-1|AAR86939.1|  857|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 857

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 192 DFSCCHKPSETCKYYFNLIKS 130
           D    HKP+ T + +FN IKS
Sbjct: 698 DIKVAHKPTNTLQKFFNKIKS 718


>AY484404-1|AAR86938.1|  857|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 857

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 192 DFSCCHKPSETCKYYFNLIKS 130
           D    HKP+ T + +FN IKS
Sbjct: 698 DIKVAHKPTNTLQKFFNKIKS 718


>AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-PA
            protein.
          Length = 2059

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = -3

Query: 210  LYDNICDFSCCH-----KPSETCKYYFNLIK 133
            LY+ IC  SCC      KPSET  +  +L++
Sbjct: 1458 LYEMICTHSCCFDHLLGKPSETKTHILHLME 1488


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,868,311
Number of Sequences: 53049
Number of extensions: 83710
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 24,988,368
effective HSP length: 51
effective length of database: 22,282,869
effective search space used: 445657380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)