Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I18
         (215 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40802-10|AAK19008.2|  374|Caenorhabditis elegans Hypothetical p...    27   2.4  
U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z95559-21|CAM35842.1|  440|Caenorhabditis elegans Hypothetical p...    25   7.3  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    25   7.3  
U40415-1|AAK39255.4|  445|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U40802-10|AAK19008.2|  374|Caenorhabditis elegans Hypothetical
           protein ZC477.2 protein.
          Length = 374

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 210 LYDNICDFSCCHKPSETCKYYFNLIKSSTKXXXXXXXXXXXXXXXLNLKIICRS 49
           L+ +  DF   H P+   KY FN+I++ +                 NLK+I RS
Sbjct: 245 LFADTLDFDLIHIPTRKPKYEFNVIRNMS--VMYNEAAVTQFCEKFNLKLIIRS 296


>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 215 PIYMIIFVTFPVVTNLAKLA 156
           P+Y+I F+ FP+V  L+++A
Sbjct: 128 PLYVIPFIPFPLVVGLSRVA 147


>Z95559-21|CAM35842.1|  440|Caenorhabditis elegans Hypothetical
           protein Y41E3.10b protein.
          Length = 440

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 24  ILFEVRESKNDK*SLNLVKILKYNTLVLI 110
           ILF++ ES+ +K ++ LVK +  N L  I
Sbjct: 351 ILFKIGESEGEKLAVELVKSIAGNCLAAI 379


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 147 SNICKFR*VCDNRKSHKYYH 206
           + ICK+  +CD   S+  YH
Sbjct: 444 NQICKYTGICDKADSYNKYH 463


>U40415-1|AAK39255.4|  445|Caenorhabditis elegans Hypothetical
           protein K02G10.3 protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 121 NLYIINTRVLYLRIFTKFKDYLSFFDSLT 35
           +L+++     +L +  KF+ +L FF  +T
Sbjct: 82  SLFLVTNMCFFLILLCKFRKWLGFFTPIT 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,782,025
Number of Sequences: 27780
Number of extensions: 49885
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)